Strain Fitness in Xanthobacter sp. DMC5 around GFF95

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF94 and GFF95 are separated by 200 nucleotidesGFF95 and GFF96 are separated by 254 nucleotides GFF94 - Peptidoglycan-associated lipoprotein, at 103,761 to 104,252 GFF94 GFF95 - Cell division coordinator CpoB, at 104,453 to 105,412 GFF95 GFF96 - tRNA(Ile)-lysidine synthase, at 105,667 to 106,518 GFF96 Position (kb) 104 105 106Strain fitness (log2 ratio) -1 0 1at 103.588 kb on + strandat 103.610 kb on - strandat 103.610 kb on - strandat 103.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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103,588 + -0.5
103,610 - +0.9
103,610 - +0.2
103,717 + +0.4

Or see this region's nucleotide sequence