Strain Fitness in Xanthobacter sp. DMC5 around GFF948

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF946 and GFF947 are separated by 33 nucleotidesGFF947 and GFF948 are separated by 389 nucleotidesGFF948 and GFF949 are separated by 173 nucleotides GFF946 - Transcription-repair-coupling factor, at 1,019,614 to 1,023,123 GFF946 GFF947 - hypothetical protein, at 1,023,157 to 1,023,453 GFF947 GFF948 - Triosephosphate isomerase, at 1,023,843 to 1,024,592 GFF948 GFF949 - Peptidyl-prolyl cis-trans isomerase D, at 1,024,766 to 1,026,661 GFF949 Position (kb) 1023 1024 1025Strain fitness (log2 ratio) -3 -2 -1 0 1at 1023.512 kb on - strandat 1023.513 kb on + strandat 1023.513 kb on + strandat 1023.514 kb on - strandat 1023.514 kb on - strandat 1024.632 kb on + strandat 1024.632 kb on + strandat 1024.644 kb on + strandat 1024.645 kb on - strandat 1024.712 kb on + strandat 1024.713 kb on - strandat 1025.348 kb on + strand, within GFF949

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
1,023,512 - -0.7
1,023,513 + +1.1
1,023,513 + -0.7
1,023,514 - -1.2
1,023,514 - +0.6
1,024,632 + -2.0
1,024,632 + +0.2
1,024,644 + -3.3
1,024,645 - -0.6
1,024,712 + +1.5
1,024,713 - -0.5
1,025,348 + GFF949 0.31 +0.1

Or see this region's nucleotide sequence