Strain Fitness in Xanthobacter sp. DMC5 around GFF947

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF946 and GFF947 are separated by 33 nucleotidesGFF947 and GFF948 are separated by 389 nucleotides GFF946 - Transcription-repair-coupling factor, at 1,019,614 to 1,023,123 GFF946 GFF947 - hypothetical protein, at 1,023,157 to 1,023,453 GFF947 GFF948 - Triosephosphate isomerase, at 1,023,843 to 1,024,592 GFF948 Position (kb) 1023 1024Strain fitness (log2 ratio) -1 0 1at 1022.190 kb on - strand, within GFF946at 1022.270 kb on + strand, within GFF946at 1022.399 kb on + strand, within GFF946at 1022.400 kb on - strand, within GFF946at 1022.400 kb on - strand, within GFF946at 1022.606 kb on + strand, within GFF946at 1022.606 kb on + strand, within GFF946at 1023.512 kb on - strandat 1023.513 kb on + strandat 1023.513 kb on + strandat 1023.514 kb on - strandat 1023.514 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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1,022,190 - GFF946 0.73 -0.4
1,022,270 + GFF946 0.76 +0.3
1,022,399 + GFF946 0.79 +0.0
1,022,400 - GFF946 0.79 -0.7
1,022,400 - GFF946 0.79 -0.7
1,022,606 + GFF946 0.85 +0.6
1,022,606 + GFF946 0.85 -0.9
1,023,512 - -0.7
1,023,513 + +1.1
1,023,513 + -0.7
1,023,514 - -1.2
1,023,514 - +0.6

Or see this region's nucleotide sequence