Strain Fitness in Xanthobacter sp. DMC5 around GFF93

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF91 and GFF92 are separated by 127 nucleotidesGFF92 and GFF93 overlap by 4 nucleotidesGFF93 and GFF94 are separated by 407 nucleotides GFF91 - hypothetical protein, at 100,417 to 101,439 GFF91 GFF92 - Thiamine-phosphate synthase, at 101,567 to 102,199 GFF92 GFF93 - hypothetical protein, at 102,196 to 103,353 GFF93 GFF94 - Peptidoglycan-associated lipoprotein, at 103,761 to 104,252 GFF94 Position (kb) 102 103 104Strain fitness (log2 ratio) -2 -1 0 1at 101.278 kb on + strand, within GFF91at 101.278 kb on + strand, within GFF91at 101.278 kb on + strand, within GFF91at 101.491 kb on + strandat 101.492 kb on - strandat 101.492 kb on - strandat 101.945 kb on + strand, within GFF92at 103.588 kb on + strandat 103.610 kb on - strandat 103.610 kb on - strandat 103.717 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
101,278 + GFF91 0.84 +0.5
101,278 + GFF91 0.84 -0.5
101,278 + GFF91 0.84 -0.4
101,491 + -0.4
101,492 - -0.8
101,492 - -2.4
101,945 + GFF92 0.60 +0.2
103,588 + -0.5
103,610 - +0.9
103,610 - +0.2
103,717 + +0.4

Or see this region's nucleotide sequence