Strain Fitness in Xanthobacter sp. DMC5 around GFF925

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF924 and GFF925 overlap by 4 nucleotidesGFF925 and GFF926 are separated by 129 nucleotidesGFF926 and GFF927 are separated by 177 nucleotides GFF924 - Glutamyl-tRNA(Gln) amidotransferase subunit A, at 995,949 to 997,433 GFF924 GFF925 - Glutamyl-tRNA(Gln) amidotransferase subunit C, at 997,430 to 997,717 GFF925 GFF926 - Putative pre-16S rRNA nuclease, at 997,847 to 998,365 GFF926 GFF927 - hypothetical protein, at 998,543 to 999,478 GFF927 Position (kb) 997 998Strain fitness (log2 ratio) -1 0 1at 997.747 kb on - strandat 997.749 kb on - strandat 997.749 kb on - strandat 997.824 kb on - strandat 997.835 kb on + strandat 998.499 kb on + strandat 998.500 kb on - strandat 998.500 kb on - strandat 998.660 kb on + strand, within GFF927at 998.660 kb on + strand, within GFF927at 998.661 kb on - strand, within GFF927at 998.661 kb on - strand, within GFF927

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
997,747 - +0.2
997,749 - -1.2
997,749 - -1.1
997,824 - +0.3
997,835 + -0.5
998,499 + +0.3
998,500 - +0.1
998,500 - +0.6
998,660 + GFF927 0.12 -1.0
998,660 + GFF927 0.12 -0.3
998,661 - GFF927 0.13 -0.7
998,661 - GFF927 0.13 -1.6

Or see this region's nucleotide sequence