Strain Fitness in Xanthobacter sp. DMC5 around GFF921

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF920 and GFF921 are separated by 361 nucleotidesGFF921 and GFF922 are separated by 199 nucleotides GFF920 - hypothetical protein, at 990,939 to 991,595 GFF920 GFF921 - Octanoyltransferase, at 991,957 to 992,685 GFF921 GFF922 - Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, at 992,885 to 994,375 GFF922 Position (kb) 991 992 993Strain fitness (log2 ratio) -2 -1 0 1at 990.984 kb on + strandat 990.984 kb on + strandat 990.984 kb on + strandat 990.985 kb on - strandat 990.985 kb on - strandat 991.195 kb on - strand, within GFF920at 991.195 kb on - strand, within GFF920at 991.195 kb on - strand, within GFF920at 991.501 kb on - strand, within GFF920at 991.501 kb on - strand, within GFF920at 991.944 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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990,984 + +0.4
990,984 + -1.8
990,984 + +1.1
990,985 - +1.4
990,985 - -1.9
991,195 - GFF920 0.39 -0.5
991,195 - GFF920 0.39 -0.0
991,195 - GFF920 0.39 -0.1
991,501 - GFF920 0.86 -0.5
991,501 - GFF920 0.86 -0.6
991,944 + -0.8

Or see this region's nucleotide sequence