Strain Fitness in Xanthobacter sp. DMC5 around GFF92

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF91 and GFF92 are separated by 127 nucleotidesGFF92 and GFF93 overlap by 4 nucleotides GFF91 - hypothetical protein, at 100,417 to 101,439 GFF91 GFF92 - Thiamine-phosphate synthase, at 101,567 to 102,199 GFF92 GFF93 - hypothetical protein, at 102,196 to 103,353 GFF93 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1at 100.594 kb on + strand, within GFF91at 100.594 kb on + strand, within GFF91at 100.595 kb on - strand, within GFF91at 100.616 kb on - strand, within GFF91at 100.793 kb on - strand, within GFF91at 100.864 kb on + strand, within GFF91at 100.864 kb on + strand, within GFF91at 100.903 kb on + strand, within GFF91at 101.035 kb on + strand, within GFF91at 101.035 kb on + strand, within GFF91at 101.035 kb on + strand, within GFF91at 101.036 kb on - strand, within GFF91at 101.038 kb on + strand, within GFF91at 101.039 kb on - strand, within GFF91at 101.039 kb on - strand, within GFF91at 101.278 kb on + strand, within GFF91at 101.278 kb on + strand, within GFF91at 101.278 kb on + strand, within GFF91at 101.491 kb on + strandat 101.492 kb on - strandat 101.492 kb on - strandat 101.945 kb on + strand, within GFF92

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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100,594 + GFF91 0.17 -0.8
100,594 + GFF91 0.17 +0.5
100,595 - GFF91 0.17 +0.1
100,616 - GFF91 0.19 +1.4
100,793 - GFF91 0.37 -1.0
100,864 + GFF91 0.44 +0.6
100,864 + GFF91 0.44 -0.1
100,903 + GFF91 0.48 +0.6
101,035 + GFF91 0.60 -1.5
101,035 + GFF91 0.60 -1.3
101,035 + GFF91 0.60 -1.5
101,036 - GFF91 0.61 -1.0
101,038 + GFF91 0.61 -1.3
101,039 - GFF91 0.61 -0.4
101,039 - GFF91 0.61 +0.1
101,278 + GFF91 0.84 +0.5
101,278 + GFF91 0.84 -0.5
101,278 + GFF91 0.84 -0.4
101,491 + -0.4
101,492 - -0.8
101,492 - -2.4
101,945 + GFF92 0.60 +0.2

Or see this region's nucleotide sequence