Strain Fitness in Xanthobacter sp. DMC5 around GFF90

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF89 and GFF90 are separated by 22 nucleotidesGFF90 and GFF91 are separated by 222 nucleotides GFF89 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 97,971 to 98,978 GFF89 GFF90 - Bifunctional PGK/TIM, at 99,001 to 100,194 GFF90 GFF91 - hypothetical protein, at 100,417 to 101,439 GFF91 Position (kb) 99 100 101Strain fitness (log2 ratio) -1 0 1at 100.559 kb on - strand, within GFF91at 100.594 kb on + strand, within GFF91at 100.594 kb on + strand, within GFF91at 100.595 kb on - strand, within GFF91at 100.616 kb on - strand, within GFF91at 100.793 kb on - strand, within GFF91at 100.864 kb on + strand, within GFF91at 100.864 kb on + strand, within GFF91at 100.903 kb on + strand, within GFF91at 101.035 kb on + strand, within GFF91at 101.035 kb on + strand, within GFF91at 101.035 kb on + strand, within GFF91at 101.036 kb on - strand, within GFF91at 101.038 kb on + strand, within GFF91at 101.039 kb on - strand, within GFF91at 101.039 kb on - strand, within GFF91

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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100,559 - GFF91 0.14 -0.7
100,594 + GFF91 0.17 -0.8
100,594 + GFF91 0.17 +0.5
100,595 - GFF91 0.17 +0.1
100,616 - GFF91 0.19 +1.4
100,793 - GFF91 0.37 -1.0
100,864 + GFF91 0.44 +0.6
100,864 + GFF91 0.44 -0.1
100,903 + GFF91 0.48 +0.6
101,035 + GFF91 0.60 -1.5
101,035 + GFF91 0.60 -1.3
101,035 + GFF91 0.60 -1.5
101,036 - GFF91 0.61 -1.0
101,038 + GFF91 0.61 -1.3
101,039 - GFF91 0.61 -0.4
101,039 - GFF91 0.61 +0.1

Or see this region's nucleotide sequence