Strain Fitness in Xanthobacter sp. DMC5 around GFF892

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF891 and GFF892 are separated by 110 nucleotidesGFF892 and GFF893 are separated by 86 nucleotides GFF891 - hypothetical protein, at 961,301 to 962,143 GFF891 GFF892 - queuosine precursor transporter, at 962,254 to 963,027 GFF892 GFF893 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 963,114 to 964,334 GFF893 Position (kb) 962 963 964Strain fitness (log2 ratio) -2 -1 0 1 2at 961.346 kb on + strandat 961.347 kb on - strandat 961.367 kb on - strandat 961.399 kb on + strand, within GFF891at 961.400 kb on - strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.430 kb on + strand, within GFF891at 961.431 kb on - strand, within GFF891at 961.436 kb on + strand, within GFF891at 961.437 kb on - strand, within GFF891at 961.437 kb on - strand, within GFF891at 961.440 kb on + strand, within GFF891at 961.441 kb on - strand, within GFF891at 961.441 kb on - strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.485 kb on + strand, within GFF891at 961.486 kb on - strand, within GFF891at 961.486 kb on - strand, within GFF891at 961.487 kb on + strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.583 kb on - strand, within GFF891at 961.651 kb on + strand, within GFF891at 961.652 kb on - strand, within GFF891at 961.652 kb on - strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.659 kb on + strand, within GFF891at 961.807 kb on + strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.808 kb on - strand, within GFF891at 961.833 kb on - strand, within GFF891at 961.855 kb on - strand, within GFF891at 961.872 kb on - strand, within GFF891at 961.872 kb on - strand, within GFF891at 961.965 kb on + strand, within GFF891at 961.965 kb on + strand, within GFF891at 961.965 kb on + strand, within GFF891at 962.055 kb on + strand, within GFF891at 962.055 kb on + strand, within GFF891at 962.073 kb on + strandat 962.074 kb on - strandat 962.074 kb on - strandat 962.102 kb on + strandat 962.103 kb on - strandat 962.104 kb on + strandat 962.105 kb on - strandat 962.105 kb on - strandat 962.106 kb on + strandat 962.143 kb on + strandat 962.143 kb on + strandat 962.144 kb on - strandat 962.178 kb on - strandat 962.178 kb on - strandat 962.185 kb on + strandat 962.185 kb on + strandat 962.186 kb on - strandat 962.186 kb on - strandat 962.186 kb on - strandat 962.203 kb on + strandat 962.204 kb on - strandat 962.204 kb on - strandat 962.204 kb on - strandat 962.206 kb on + strandat 962.229 kb on + strandat 962.297 kb on + strandat 962.297 kb on + strandat 962.297 kb on + strandat 962.298 kb on - strandat 962.298 kb on - strandat 962.342 kb on + strand, within GFF892at 962.343 kb on - strand, within GFF892at 962.343 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.388 kb on - strand, within GFF892at 962.702 kb on + strand, within GFF892at 962.703 kb on - strand, within GFF892at 962.703 kb on - strand, within GFF892at 962.751 kb on - strand, within GFF892at 962.751 kb on - strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.756 kb on + strand, within GFF892at 962.757 kb on - strand, within GFF892at 962.757 kb on - strand, within GFF892at 962.786 kb on + strand, within GFF892at 962.786 kb on + strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.787 kb on - strand, within GFF892at 962.918 kb on + strand, within GFF892at 962.919 kb on - strand, within GFF892at 962.925 kb on - strand, within GFF892at 962.925 kb on - strand, within GFF892at 962.928 kb on - strand, within GFF892at 963.253 kb on + strand, within GFF893at 963.253 kb on + strand, within GFF893at 963.253 kb on + strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.254 kb on - strand, within GFF893at 963.330 kb on + strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.331 kb on - strand, within GFF893at 963.510 kb on - strand, within GFF893at 963.970 kb on + strand, within GFF893

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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961,346 + +0.7
961,347 - -0.8
961,367 - +0.6
961,399 + GFF891 0.12 +0.2
961,400 - GFF891 0.12 +0.6
961,430 + GFF891 0.15 -0.3
961,430 + GFF891 0.15 +0.9
961,430 + GFF891 0.15 -1.1
961,431 - GFF891 0.15 -1.2
961,436 + GFF891 0.16 +0.2
961,437 - GFF891 0.16 +0.2
961,437 - GFF891 0.16 -1.8
961,440 + GFF891 0.16 +0.1
961,441 - GFF891 0.17 -0.4
961,441 - GFF891 0.17 +1.3
961,485 + GFF891 0.22 +0.3
961,485 + GFF891 0.22 +0.6
961,485 + GFF891 0.22 -0.0
961,486 - GFF891 0.22 +0.3
961,486 - GFF891 0.22 -0.1
961,487 + GFF891 0.22 -2.1
961,583 - GFF891 0.33 -0.7
961,583 - GFF891 0.33 +0.3
961,583 - GFF891 0.33 -1.0
961,651 + GFF891 0.42 -1.5
961,652 - GFF891 0.42 +0.3
961,652 - GFF891 0.42 -0.9
961,659 + GFF891 0.42 -1.0
961,659 + GFF891 0.42 -1.3
961,659 + GFF891 0.42 +0.2
961,807 + GFF891 0.60 +0.3
961,808 - GFF891 0.60 +1.1
961,808 - GFF891 0.60 +0.1
961,808 - GFF891 0.60 +0.7
961,808 - GFF891 0.60 +0.2
961,833 - GFF891 0.63 -0.3
961,855 - GFF891 0.66 -0.7
961,872 - GFF891 0.68 -0.3
961,872 - GFF891 0.68 -0.5
961,965 + GFF891 0.79 +0.5
961,965 + GFF891 0.79 +1.7
961,965 + GFF891 0.79 -0.7
962,055 + GFF891 0.89 -0.0
962,055 + GFF891 0.89 +0.4
962,073 + -1.0
962,074 - -1.1
962,074 - -1.4
962,102 + -1.2
962,103 - +1.1
962,104 + -0.3
962,105 - +1.1
962,105 - -1.3
962,106 + -0.0
962,143 + +1.3
962,143 + +1.3
962,144 - +0.5
962,178 - +0.9
962,178 - +0.3
962,185 + -1.6
962,185 + -1.4
962,186 - -1.1
962,186 - -0.8
962,186 - -0.3
962,203 + +0.7
962,204 - -1.5
962,204 - +0.8
962,204 - -0.7
962,206 + -0.6
962,229 + -1.0
962,297 + +0.6
962,297 + +0.8
962,297 + +0.9
962,298 - -0.3
962,298 - +0.5
962,342 + GFF892 0.11 +0.1
962,343 - GFF892 0.11 -0.4
962,343 - GFF892 0.11 -0.7
962,388 - GFF892 0.17 -1.3
962,388 - GFF892 0.17 -1.6
962,388 - GFF892 0.17 +0.4
962,702 + GFF892 0.58 +0.5
962,703 - GFF892 0.58 -0.3
962,703 - GFF892 0.58 +0.6
962,751 - GFF892 0.64 -1.9
962,751 - GFF892 0.64 -0.5
962,756 + GFF892 0.65 +0.8
962,756 + GFF892 0.65 +0.9
962,756 + GFF892 0.65 -0.6
962,757 - GFF892 0.65 -0.3
962,757 - GFF892 0.65 -1.2
962,786 + GFF892 0.69 -0.1
962,786 + GFF892 0.69 -2.0
962,787 - GFF892 0.69 +0.3
962,787 - GFF892 0.69 +1.0
962,787 - GFF892 0.69 +0.9
962,918 + GFF892 0.86 +1.1
962,919 - GFF892 0.86 +0.3
962,925 - GFF892 0.87 +1.1
962,925 - GFF892 0.87 -0.5
962,928 - GFF892 0.87 -0.6
963,253 + GFF893 0.11 -0.1
963,253 + GFF893 0.11 -0.5
963,253 + GFF893 0.11 -1.6
963,254 - GFF893 0.11 -0.7
963,254 - GFF893 0.11 +0.1
963,254 - GFF893 0.11 -0.4
963,254 - GFF893 0.11 -0.8
963,254 - GFF893 0.11 +1.8
963,330 + GFF893 0.18 -0.6
963,331 - GFF893 0.18 +1.5
963,331 - GFF893 0.18 -0.5
963,331 - GFF893 0.18 +0.4
963,510 - GFF893 0.32 +0.1
963,970 + GFF893 0.70 +0.1

Or see this region's nucleotide sequence