Strain Fitness in Xanthobacter sp. DMC5 around GFF88

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF86 and GFF87 are separated by 4 nucleotidesGFF87 and GFF88 are separated by 375 nucleotidesGFF88 and GFF89 are separated by 106 nucleotides GFF86 - hypothetical protein, at 94,789 to 95,172 GFF86 GFF87 - hypothetical protein, at 95,177 to 95,482 GFF87 GFF88 - Transketolase 1, at 95,858 to 97,864 GFF88 GFF89 - Glyceraldehyde-3-phosphate dehydrogenase 1, at 97,971 to 98,978 GFF89 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -1 0 1at 95.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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95,813 + -0.1

Or see this region's nucleotide sequence