Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF872 and GFF873 are separated by 171 nucleotides GFF873 and GFF874 overlap by 8 nucleotides GFF874 and GFF875 are separated by 13 nucleotides GFF875 and GFF876 are separated by 50 nucleotides GFF876 and GFF877 overlap by 14 nucleotides GFF877 and GFF878 are separated by 283 nucleotides GFF878 and GFF879 overlap by 14 nucleotides
GFF872 - hypothetical protein, at 945,494 to 945,823
GFF872
GFF873 - hypothetical protein, at 945,995 to 946,492
GFF873
GFF874 - hypothetical protein, at 946,485 to 946,613
GFF874
GFF875 - hypothetical protein, at 946,627 to 947,445
GFF875
GFF876 - hypothetical protein, at 947,496 to 947,729
GFF876
GFF877 - hypothetical protein, at 947,716 to 948,012
GFF877
GFF878 - hypothetical protein, at 948,296 to 948,436
GFF878
GFF879 - hypothetical protein, at 948,423 to 950,276
GFF879
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.758 kb on + strand, within GFF872 at 945.817 kb on + strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.818 kb on - strand at 945.822 kb on - strand at 945.839 kb on - strand at 945.839 kb on - strand at 945.875 kb on - strand at 945.875 kb on - strand at 945.887 kb on - strand at 945.992 kb on + strand at 945.993 kb on - strand at 946.088 kb on - strand, within GFF873 at 946.445 kb on + strand at 946.824 kb on + strand, within GFF875 at 946.846 kb on + strand, within GFF875 at 946.847 kb on - strand, within GFF875 at 946.847 kb on - strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.930 kb on + strand, within GFF875 at 946.931 kb on - strand, within GFF875 at 946.944 kb on + strand, within GFF875 at 946.984 kb on + strand, within GFF875 at 946.984 kb on + strand, within GFF875 at 947.158 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.160 kb on + strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.161 kb on - strand, within GFF875 at 947.169 kb on + strand, within GFF875 at 947.169 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.239 kb on + strand, within GFF875 at 947.481 kb on + strand at 947.481 kb on + strand at 947.481 kb on + strand at 947.482 kb on - strand at 947.482 kb on - strand at 947.605 kb on + strand, within GFF876 at 947.606 kb on - strand, within GFF876 at 947.898 kb on - strand, within GFF877 at 947.935 kb on - strand, within GFF877 at 947.935 kb on - strand, within GFF877 at 948.023 kb on - strand at 948.025 kb on - strand at 948.025 kb on - strand at 948.145 kb on + strand at 948.146 kb on - strand at 948.185 kb on + strand at 948.212 kb on - strand at 948.225 kb on + strand at 948.330 kb on + strand, within GFF878 at 948.330 kb on + strand, within GFF878 at 948.396 kb on + strand, within GFF878 at 948.405 kb on + strand, within GFF878
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 945,758 + GFF872 0.80 -0.3 945,817 + +1.7 945,818 - -0.5 945,818 - +0.6 945,818 - -0.6 945,818 - -1.9 945,818 - -0.1 945,818 - +0.1 945,818 - +0.6 945,818 - -0.1 945,818 - +0.6 945,818 - +0.2 945,818 - -0.0 945,818 - +0.7 945,818 - -2.3 945,822 - +0.2 945,839 - +0.7 945,839 - +0.6 945,875 - -1.5 945,875 - -0.2 945,887 - +0.0 945,992 + +1.2 945,993 - -0.5 946,088 - GFF873 0.19 -1.5 946,445 + +1.9 946,824 + GFF875 0.24 +0.5 946,846 + GFF875 0.27 -0.3 946,847 - GFF875 0.27 +0.8 946,847 - GFF875 0.27 +0.3 946,930 + GFF875 0.37 -0.6 946,930 + GFF875 0.37 +0.7 946,930 + GFF875 0.37 +0.2 946,930 + GFF875 0.37 -0.2 946,931 - GFF875 0.37 -0.3 946,944 + GFF875 0.39 +0.2 946,984 + GFF875 0.44 -0.0 946,984 + GFF875 0.44 +0.7 947,158 + GFF875 0.65 +0.1 947,160 + GFF875 0.65 -1.0 947,160 + GFF875 0.65 -0.4 947,160 + GFF875 0.65 +0.3 947,160 + GFF875 0.65 -0.1 947,161 - GFF875 0.65 +1.3 947,161 - GFF875 0.65 -1.5 947,161 - GFF875 0.65 -0.7 947,161 - GFF875 0.65 +0.1 947,169 + GFF875 0.66 +0.3 947,169 + GFF875 0.66 +0.5 947,239 + GFF875 0.75 -0.4 947,239 + GFF875 0.75 -0.4 947,239 + GFF875 0.75 +0.0 947,239 + GFF875 0.75 +1.1 947,481 + +0.7 947,481 + +2.3 947,481 + +0.0 947,482 - -0.1 947,482 - -1.4 947,605 + GFF876 0.47 -0.7 947,606 - GFF876 0.47 -1.0 947,898 - GFF877 0.61 -0.3 947,935 - GFF877 0.74 -0.7 947,935 - GFF877 0.74 -1.7 948,023 - -1.0 948,025 - -0.5 948,025 - -0.5 948,145 + +1.3 948,146 - -0.3 948,185 + -0.1 948,212 - -0.3 948,225 + +0.4 948,330 + GFF878 0.24 -0.7 948,330 + GFF878 0.24 -0.3 948,396 + GFF878 0.71 -0.1 948,405 + GFF878 0.77 -0.3
Or see this region's nucleotide sequence