Strain Fitness in Xanthobacter sp. DMC5 around GFF87

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF85 and GFF86 are separated by 324 nucleotidesGFF86 and GFF87 are separated by 4 nucleotidesGFF87 and GFF88 are separated by 375 nucleotides GFF85 - 5-formyltetrahydrofolate cyclo-ligase, at 93,937 to 94,464 GFF85 GFF86 - hypothetical protein, at 94,789 to 95,172 GFF86 GFF87 - hypothetical protein, at 95,177 to 95,482 GFF87 GFF88 - Transketolase 1, at 95,858 to 97,864 GFF88 Position (kb) 95 96Strain fitness (log2 ratio) -1 0 1at 94.464 kb on + strandat 94.623 kb on - strandat 94.629 kb on + strandat 94.642 kb on + strandat 94.642 kb on + strandat 94.642 kb on + strandat 94.643 kb on - strandat 94.745 kb on + strandat 94.746 kb on - strandat 95.813 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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94,464 + +0.1
94,623 - -1.6
94,629 + +0.2
94,642 + -0.9
94,642 + -0.8
94,642 + +0.6
94,643 - -0.4
94,745 + +0.5
94,746 - -0.8
95,813 + -0.1

Or see this region's nucleotide sequence