Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF868 and GFF869 are separated by 311 nucleotides GFF869 and GFF870 are separated by 356 nucleotides
GFF868 - hypothetical protein, at 939,702 to 940,682
GFF868
GFF869 - Lipid A export ATP-binding/permease protein MsbA, at 940,994 to 942,844
GFF869
GFF870 - Prophage integrase IntS, at 943,201 to 944,439
GFF870
Position (kb) 940
941
942
943 Strain fitness (log2 ratio) -2
-1
0
1 at 940.248 kb on + strand, within GFF868 at 940.248 kb on + strand, within GFF868 at 940.258 kb on + strand, within GFF868 at 940.278 kb on + strand, within GFF868 at 940.303 kb on - strand, within GFF868 at 940.335 kb on + strand, within GFF868 at 940.355 kb on + strand, within GFF868 at 940.386 kb on + strand, within GFF868 at 940.387 kb on - strand, within GFF868 at 940.410 kb on + strand, within GFF868 at 940.410 kb on + strand, within GFF868 at 940.484 kb on + strand, within GFF868 at 940.485 kb on - strand, within GFF868 at 940.485 kb on - strand, within GFF868 at 940.547 kb on + strand, within GFF868 at 940.566 kb on + strand, within GFF868 at 940.566 kb on + strand, within GFF868 at 940.569 kb on - strand, within GFF868 at 940.669 kb on - strand at 940.861 kb on + strand at 940.861 kb on + strand at 940.862 kb on - strand at 940.991 kb on + strand at 943.250 kb on - strand at 943.250 kb on - strand at 943.283 kb on + strand at 943.369 kb on + strand, within GFF870 at 943.369 kb on + strand, within GFF870 at 943.370 kb on - strand, within GFF870 at 943.370 kb on - strand, within GFF870 at 943.451 kb on + strand, within GFF870 at 943.451 kb on + strand, within GFF870 at 943.452 kb on - strand, within GFF870 at 943.452 kb on - strand, within GFF870 at 943.519 kb on - strand, within GFF870 at 943.735 kb on + strand, within GFF870 at 943.773 kb on + strand, within GFF870 at 943.773 kb on + strand, within GFF870 at 943.774 kb on - strand, within GFF870 at 943.774 kb on - strand, within GFF870 at 943.782 kb on - strand, within GFF870
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 940,248 + GFF868 0.56 +0.4 940,248 + GFF868 0.56 +0.3 940,258 + GFF868 0.57 -1.8 940,278 + GFF868 0.59 +0.1 940,303 - GFF868 0.61 -1.3 940,335 + GFF868 0.65 -0.0 940,355 + GFF868 0.67 -2.7 940,386 + GFF868 0.70 +0.0 940,387 - GFF868 0.70 +0.3 940,410 + GFF868 0.72 +0.5 940,410 + GFF868 0.72 +0.7 940,484 + GFF868 0.80 -1.2 940,485 - GFF868 0.80 +0.8 940,485 - GFF868 0.80 -1.4 940,547 + GFF868 0.86 -1.6 940,566 + GFF868 0.88 -0.8 940,566 + GFF868 0.88 -0.6 940,569 - GFF868 0.88 -0.4 940,669 - -0.9 940,861 + -0.1 940,861 + -1.8 940,862 - -1.5 940,991 + +0.1 943,250 - +1.1 943,250 - +0.9 943,283 + +0.1 943,369 + GFF870 0.14 -0.3 943,369 + GFF870 0.14 +1.3 943,370 - GFF870 0.14 +0.5 943,370 - GFF870 0.14 -1.0 943,451 + GFF870 0.20 -0.0 943,451 + GFF870 0.20 -0.8 943,452 - GFF870 0.20 +0.7 943,452 - GFF870 0.20 -1.8 943,519 - GFF870 0.26 +0.5 943,735 + GFF870 0.43 +0.6 943,773 + GFF870 0.46 -0.8 943,773 + GFF870 0.46 -0.5 943,774 - GFF870 0.46 -0.3 943,774 - GFF870 0.46 -0.8 943,782 - GFF870 0.47 -0.1
Or see this region's nucleotide sequence