Strain Fitness in Xanthobacter sp. DMC5 around GFF866

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF865 and GFF866 are separated by 243 nucleotidesGFF866 and GFF867 are separated by 53 nucleotides GFF865 - Protein-L-isoaspartate O-methyltransferase, at 936,071 to 936,733 GFF865 GFF866 - hypothetical protein, at 936,977 to 937,426 GFF866 GFF867 - hypothetical protein, at 937,480 to 939,165 GFF867 Position (kb) 936 937 938Strain fitness (log2 ratio) -2 -1 0 1 2at 936.291 kb on + strand, within GFF865at 936.292 kb on - strand, within GFF865at 936.723 kb on + strandat 936.723 kb on + strandat 936.810 kb on + strandat 936.810 kb on + strandat 936.811 kb on - strandat 936.811 kb on - strandat 937.066 kb on + strand, within GFF866at 937.066 kb on + strand, within GFF866at 937.067 kb on - strand, within GFF866at 937.073 kb on + strand, within GFF866at 937.074 kb on - strand, within GFF866at 937.074 kb on - strand, within GFF866at 937.358 kb on + strand, within GFF866at 937.358 kb on + strand, within GFF866at 937.358 kb on + strand, within GFF866at 937.358 kb on + strand, within GFF866at 937.358 kb on + strand, within GFF866at 937.359 kb on - strand, within GFF866at 937.359 kb on - strand, within GFF866at 937.612 kb on - strandat 937.670 kb on + strand, within GFF867at 937.670 kb on + strand, within GFF867at 937.670 kb on + strand, within GFF867at 937.670 kb on + strand, within GFF867at 937.671 kb on - strand, within GFF867at 937.671 kb on - strand, within GFF867at 937.700 kb on + strand, within GFF867at 937.700 kb on + strand, within GFF867at 937.700 kb on + strand, within GFF867at 937.700 kb on + strand, within GFF867at 937.700 kb on + strand, within GFF867at 937.701 kb on - strand, within GFF867at 937.835 kb on + strand, within GFF867at 937.835 kb on + strand, within GFF867at 937.835 kb on + strand, within GFF867at 937.847 kb on + strand, within GFF867at 937.862 kb on + strand, within GFF867at 937.862 kb on + strand, within GFF867at 937.862 kb on + strand, within GFF867at 937.863 kb on - strand, within GFF867at 937.867 kb on - strand, within GFF867at 937.890 kb on + strand, within GFF867at 937.890 kb on + strand, within GFF867at 937.890 kb on + strand, within GFF867at 937.890 kb on + strand, within GFF867at 937.891 kb on - strand, within GFF867at 937.892 kb on + strand, within GFF867at 937.892 kb on + strand, within GFF867at 937.892 kb on + strand, within GFF867at 937.892 kb on + strand, within GFF867at 937.946 kb on + strand, within GFF867at 937.946 kb on + strand, within GFF867at 937.947 kb on - strand, within GFF867at 937.967 kb on + strand, within GFF867at 937.967 kb on + strand, within GFF867at 937.968 kb on - strand, within GFF867at 937.968 kb on - strand, within GFF867at 937.968 kb on - strand, within GFF867at 937.982 kb on + strand, within GFF867at 938.123 kb on + strand, within GFF867at 938.132 kb on + strand, within GFF867at 938.132 kb on + strand, within GFF867at 938.133 kb on - strand, within GFF867at 938.153 kb on + strand, within GFF867at 938.156 kb on + strand, within GFF867at 938.156 kb on + strand, within GFF867at 938.156 kb on + strand, within GFF867at 938.157 kb on - strand, within GFF867at 938.157 kb on - strand, within GFF867at 938.192 kb on + strand, within GFF867at 938.246 kb on + strand, within GFF867at 938.246 kb on + strand, within GFF867at 938.247 kb on - strand, within GFF867at 938.247 kb on - strand, within GFF867at 938.251 kb on + strand, within GFF867at 938.251 kb on + strand, within GFF867at 938.252 kb on - strand, within GFF867at 938.252 kb on - strand, within GFF867at 938.252 kb on - strand, within GFF867at 938.276 kb on + strand, within GFF867at 938.277 kb on - strand, within GFF867at 938.277 kb on - strand, within GFF867at 938.304 kb on - strand, within GFF867at 938.304 kb on - strand, within GFF867at 938.391 kb on + strand, within GFF867at 938.394 kb on - strand, within GFF867at 938.396 kb on + strand, within GFF867at 938.397 kb on - strand, within GFF867

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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936,291 + GFF865 0.33 +0.9
936,292 - GFF865 0.33 +0.0
936,723 + +1.9
936,723 + +0.3
936,810 + +1.2
936,810 + +0.0
936,811 - -0.3
936,811 - +0.8
937,066 + GFF866 0.20 -0.4
937,066 + GFF866 0.20 +1.7
937,067 - GFF866 0.20 -0.4
937,073 + GFF866 0.21 -0.4
937,074 - GFF866 0.22 -1.0
937,074 - GFF866 0.22 +0.2
937,358 + GFF866 0.85 +0.7
937,358 + GFF866 0.85 +0.9
937,358 + GFF866 0.85 +0.1
937,358 + GFF866 0.85 +0.8
937,358 + GFF866 0.85 +0.7
937,359 - GFF866 0.85 -0.5
937,359 - GFF866 0.85 -0.5
937,612 - -0.1
937,670 + GFF867 0.11 +2.0
937,670 + GFF867 0.11 +1.0
937,670 + GFF867 0.11 +0.2
937,670 + GFF867 0.11 -1.0
937,671 - GFF867 0.11 -0.2
937,671 - GFF867 0.11 -0.5
937,700 + GFF867 0.13 -0.6
937,700 + GFF867 0.13 +0.2
937,700 + GFF867 0.13 -1.1
937,700 + GFF867 0.13 -0.1
937,700 + GFF867 0.13 +0.8
937,701 - GFF867 0.13 -2.6
937,835 + GFF867 0.21 +0.0
937,835 + GFF867 0.21 -0.0
937,835 + GFF867 0.21 -0.4
937,847 + GFF867 0.22 -0.3
937,862 + GFF867 0.23 +0.7
937,862 + GFF867 0.23 -0.3
937,862 + GFF867 0.23 -1.1
937,863 - GFF867 0.23 -0.4
937,867 - GFF867 0.23 -0.5
937,890 + GFF867 0.24 +0.9
937,890 + GFF867 0.24 +1.2
937,890 + GFF867 0.24 +0.7
937,890 + GFF867 0.24 -1.6
937,891 - GFF867 0.24 +1.1
937,892 + GFF867 0.24 +0.5
937,892 + GFF867 0.24 -0.5
937,892 + GFF867 0.24 +0.9
937,892 + GFF867 0.24 +0.1
937,946 + GFF867 0.28 +0.2
937,946 + GFF867 0.28 -0.7
937,947 - GFF867 0.28 +1.3
937,967 + GFF867 0.29 +1.1
937,967 + GFF867 0.29 +1.2
937,968 - GFF867 0.29 -0.7
937,968 - GFF867 0.29 +0.7
937,968 - GFF867 0.29 +0.5
937,982 + GFF867 0.30 +0.0
938,123 + GFF867 0.38 +0.5
938,132 + GFF867 0.39 +0.3
938,132 + GFF867 0.39 -0.1
938,133 - GFF867 0.39 +0.2
938,153 + GFF867 0.40 +0.5
938,156 + GFF867 0.40 +0.4
938,156 + GFF867 0.40 +1.1
938,156 + GFF867 0.40 -0.5
938,157 - GFF867 0.40 +0.6
938,157 - GFF867 0.40 +0.1
938,192 + GFF867 0.42 -0.1
938,246 + GFF867 0.45 +1.3
938,246 + GFF867 0.45 +0.2
938,247 - GFF867 0.45 +0.5
938,247 - GFF867 0.45 -1.8
938,251 + GFF867 0.46 -1.1
938,251 + GFF867 0.46 -0.6
938,252 - GFF867 0.46 -1.7
938,252 - GFF867 0.46 -0.6
938,252 - GFF867 0.46 -1.0
938,276 + GFF867 0.47 +0.0
938,277 - GFF867 0.47 -0.2
938,277 - GFF867 0.47 -0.1
938,304 - GFF867 0.49 +1.9
938,304 - GFF867 0.49 -0.3
938,391 + GFF867 0.54 +1.3
938,394 - GFF867 0.54 +1.0
938,396 + GFF867 0.54 -0.1
938,397 - GFF867 0.54 +0.3

Or see this region's nucleotide sequence