Strain Fitness in Xanthobacter sp. DMC5 around GFF864

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF863 and GFF864 are separated by 656 nucleotidesGFF864 and GFF865 are separated by 280 nucleotides GFF863 - hypothetical protein, at 933,515 to 933,859 GFF863 GFF864 - Outer membrane efflux protein BepC, at 934,516 to 935,790 GFF864 GFF865 - Protein-L-isoaspartate O-methyltransferase, at 936,071 to 936,733 GFF865 Position (kb) 934 935 936Strain fitness (log2 ratio) -2 -1 0 1 2at 933.622 kb on - strand, within GFF863at 934.110 kb on + strandat 934.111 kb on - strandat 934.197 kb on - strandat 934.405 kb on + strandat 934.405 kb on + strandat 934.456 kb on - strandat 934.456 kb on - strandat 934.456 kb on - strandat 934.523 kb on - strandat 934.568 kb on + strandat 936.291 kb on + strand, within GFF865at 936.292 kb on - strand, within GFF865at 936.723 kb on + strandat 936.723 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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933,622 - GFF863 0.31 +0.2
934,110 + -0.1
934,111 - +0.7
934,197 - +2.0
934,405 + -2.6
934,405 + +0.6
934,456 - +1.3
934,456 - -0.5
934,456 - +0.3
934,523 - -0.8
934,568 + -0.1
936,291 + GFF865 0.33 +0.9
936,292 - GFF865 0.33 +0.0
936,723 + +1.9
936,723 + +0.3

Or see this region's nucleotide sequence