Strain Fitness in Xanthobacter sp. DMC5 around GFF862

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF861 and GFF862 are separated by 515 nucleotidesGFF862 and GFF863 are separated by 172 nucleotides GFF861 - hypothetical protein, at 929,156 to 930,037 GFF861 GFF862 - Valine--tRNA ligase, at 930,553 to 933,342 GFF862 GFF863 - hypothetical protein, at 933,515 to 933,859 GFF863 Position (kb) 930 931 932 933 934Strain fitness (log2 ratio) -1 0 1 2at 930.406 kb on + strandat 930.455 kb on - strandat 933.622 kb on - strand, within GFF863at 934.110 kb on + strandat 934.111 kb on - strandat 934.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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930,406 + -0.3
930,455 - -0.1
933,622 - GFF863 0.31 +0.2
934,110 + -0.1
934,111 - +0.7
934,197 - +2.0

Or see this region's nucleotide sequence