Strain Fitness in Xanthobacter sp. DMC5 around GFF858

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF857 and GFF858 are separated by 10 nucleotidesGFF858 and GFF859 are separated by 151 nucleotidesGFF859 and GFF860 are separated by 5 nucleotides GFF857 - hypothetical protein, at 925,207 to 926,373 GFF857 GFF858 - Peptidoglycan O-acetyltransferase, at 926,384 to 927,790 GFF858 GFF859 - Exodeoxyribonuclease III, at 927,942 to 928,730 GFF859 GFF860 - hypothetical protein, at 928,736 to 929,152 GFF860 Position (kb) 926 927 928Strain fitness (log2 ratio) -1 0 1 2 3at 927.327 kb on + strand, within GFF858at 927.870 kb on + strandat 927.875 kb on - strandat 927.913 kb on + strandat 928.266 kb on + strand, within GFF859at 928.266 kb on + strand, within GFF859at 928.267 kb on - strand, within GFF859at 928.267 kb on - strand, within GFF859at 928.267 kb on - strand, within GFF859at 928.267 kb on - strand, within GFF859at 928.302 kb on + strand, within GFF859at 928.303 kb on - strand, within GFF859at 928.303 kb on - strand, within GFF859

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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927,327 + GFF858 0.67 +0.0
927,870 + -0.4
927,875 - -0.6
927,913 + -0.5
928,266 + GFF859 0.41 -1.5
928,266 + GFF859 0.41 +0.2
928,267 - GFF859 0.41 -1.5
928,267 - GFF859 0.41 -1.3
928,267 - GFF859 0.41 +0.3
928,267 - GFF859 0.41 -0.6
928,302 + GFF859 0.46 +2.9
928,303 - GFF859 0.46 -0.8
928,303 - GFF859 0.46 +1.6

Or see this region's nucleotide sequence