Strain Fitness in Xanthobacter sp. DMC5 around GFF851

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF850 and GFF851 are separated by 169 nucleotidesGFF851 and GFF852 are separated by 2 nucleotidesGFF852 and GFF853 are separated by 55 nucleotides GFF850 - tRNA-dihydrouridine synthase B, at 916,677 to 917,696 GFF850 GFF851 - Bifunctional enzyme IspD/IspF, at 917,866 to 919,065 GFF851 GFF852 - Nicotinamide-nucleotide amidohydrolase PncC, at 919,068 to 919,556 GFF852 GFF853 - hypothetical protein, at 919,612 to 921,342 GFF853 Position (kb) 917 918 919 920Strain fitness (log2 ratio) -2 -1 0 1at 916.897 kb on + strand, within GFF850at 917.393 kb on + strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850at 919.083 kb on + strandat 919.231 kb on - strand, within GFF852

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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916,897 + GFF850 0.22 +0.0
917,393 + GFF850 0.70 +0.3
917,394 - GFF850 0.70 +0.2
917,394 - GFF850 0.70 -1.3
917,394 - GFF850 0.70 -2.6
919,083 + -1.8
919,231 - GFF852 0.33 -0.4

Or see this region's nucleotide sequence