Strain Fitness in Xanthobacter sp. DMC5 around GFF849

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF848 and GFF849 are separated by 7 nucleotidesGFF849 and GFF850 overlap by 4 nucleotides GFF848 - DNA-binding transcriptional regulator NtrC, at 913,974 to 915,416 GFF848 GFF849 - Sensory histidine kinase/phosphatase NtrB, at 915,424 to 916,680 GFF849 GFF850 - tRNA-dihydrouridine synthase B, at 916,677 to 917,696 GFF850 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1at 915.458 kb on + strandat 915.458 kb on + strandat 916.708 kb on + strandat 916.897 kb on + strand, within GFF850at 917.393 kb on + strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850at 917.394 kb on - strand, within GFF850

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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915,458 + +0.3
915,458 + -0.3
916,708 + -0.7
916,897 + GFF850 0.22 +0.0
917,393 + GFF850 0.70 +0.3
917,394 - GFF850 0.70 +0.2
917,394 - GFF850 0.70 -1.3
917,394 - GFF850 0.70 -2.6

Or see this region's nucleotide sequence