Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF847 and GFF848 are separated by 119 nucleotides GFF848 and GFF849 are separated by 7 nucleotides
GFF847 - hypothetical protein, at 913,039 to 913,854
GFF847
GFF848 - DNA-binding transcriptional regulator NtrC, at 913,974 to 915,416
GFF848
GFF849 - Sensory histidine kinase/phosphatase NtrB, at 915,424 to 916,680
GFF849
Position (kb) 913
914
915
916 Strain fitness (log2 ratio) -1
0
1 at 913.115 kb on + strand at 913.115 kb on + strand at 913.115 kb on + strand at 913.115 kb on + strand at 913.115 kb on + strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.149 kb on + strand, within GFF847 at 913.214 kb on + strand, within GFF847 at 913.263 kb on - strand, within GFF847 at 913.352 kb on - strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.429 kb on - strand, within GFF847 at 913.430 kb on + strand, within GFF847 at 913.431 kb on - strand, within GFF847 at 913.575 kb on + strand, within GFF847 at 913.635 kb on - strand, within GFF847 at 913.918 kb on + strand at 915.458 kb on + strand at 915.458 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 913,115 + -0.7 913,115 + -0.8 913,115 + -0.1 913,115 + -1.3 913,115 + +1.3 913,116 - -0.7 913,116 - -0.3 913,116 - +0.5 913,116 - -0.7 913,116 - +1.1 913,149 + GFF847 0.13 -1.1 913,214 + GFF847 0.21 -0.6 913,263 - GFF847 0.27 -0.5 913,352 - GFF847 0.38 -0.6 913,428 + GFF847 0.48 +0.4 913,428 + GFF847 0.48 +0.2 913,428 + GFF847 0.48 +0.3 913,428 + GFF847 0.48 -0.9 913,428 + GFF847 0.48 -0.3 913,428 + GFF847 0.48 -0.3 913,429 - GFF847 0.48 +0.0 913,430 + GFF847 0.48 +0.6 913,431 - GFF847 0.48 +0.4 913,575 + GFF847 0.66 +0.2 913,635 - GFF847 0.73 +0.9 913,918 + +0.4 915,458 + +0.3 915,458 + -0.3
Or see this region's nucleotide sequence