Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF845 and GFF846 are separated by 3 nucleotides GFF846 and GFF847 are separated by 241 nucleotides
GFF845 - DNA-binding transcriptional regulator NtrC, at 909,195 to 910,562
GFF845
GFF846 - Adaptive-response sensory-kinase SasA, at 910,566 to 912,797
GFF846
GFF847 - hypothetical protein, at 913,039 to 913,854
GFF847
Position (kb) 910
911
912
913 Strain fitness (log2 ratio) -1
0
1
2 at 910.621 kb on - strand at 912.092 kb on - strand, within GFF846 at 912.281 kb on - strand, within GFF846 at 912.359 kb on - strand, within GFF846 at 912.911 kb on - strand at 912.911 kb on - strand at 913.115 kb on + strand at 913.115 kb on + strand at 913.115 kb on + strand at 913.115 kb on + strand at 913.115 kb on + strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.116 kb on - strand at 913.149 kb on + strand, within GFF847 at 913.214 kb on + strand, within GFF847 at 913.263 kb on - strand, within GFF847 at 913.352 kb on - strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.428 kb on + strand, within GFF847 at 913.429 kb on - strand, within GFF847 at 913.430 kb on + strand, within GFF847 at 913.431 kb on - strand, within GFF847 at 913.575 kb on + strand, within GFF847 at 913.635 kb on - strand, within GFF847
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 910,621 - -1.3 912,092 - GFF846 0.68 +2.6 912,281 - GFF846 0.77 +1.3 912,359 - GFF846 0.80 +2.3 912,911 - -1.1 912,911 - -1.1 913,115 + -0.7 913,115 + -0.8 913,115 + -0.1 913,115 + -1.3 913,115 + +1.3 913,116 - -0.7 913,116 - -0.3 913,116 - +0.5 913,116 - -0.7 913,116 - +1.1 913,149 + GFF847 0.13 -1.1 913,214 + GFF847 0.21 -0.6 913,263 - GFF847 0.27 -0.5 913,352 - GFF847 0.38 -0.6 913,428 + GFF847 0.48 +0.4 913,428 + GFF847 0.48 +0.2 913,428 + GFF847 0.48 +0.3 913,428 + GFF847 0.48 -0.9 913,428 + GFF847 0.48 -0.3 913,428 + GFF847 0.48 -0.3 913,429 - GFF847 0.48 +0.0 913,430 + GFF847 0.48 +0.6 913,431 - GFF847 0.48 +0.4 913,575 + GFF847 0.66 +0.2 913,635 - GFF847 0.73 +0.9
Or see this region's nucleotide sequence