Strain Fitness in Xanthobacter sp. DMC5 around GFF845

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF844 and GFF845 are separated by 108 nucleotidesGFF845 and GFF846 are separated by 3 nucleotides GFF844 - Trk system potassium uptake protein TrkA, at 907,710 to 909,086 GFF844 GFF845 - DNA-binding transcriptional regulator NtrC, at 909,195 to 910,562 GFF845 GFF846 - Adaptive-response sensory-kinase SasA, at 910,566 to 912,797 GFF846 Position (kb) 909 910 911Strain fitness (log2 ratio) -1 0 1at 908.347 kb on + strand, within GFF844at 908.348 kb on - strand, within GFF844at 908.348 kb on - strand, within GFF844at 908.350 kb on + strand, within GFF844at 908.455 kb on + strand, within GFF844at 908.456 kb on - strand, within GFF844at 908.776 kb on + strand, within GFF844at 909.215 kb on + strandat 909.215 kb on + strandat 909.216 kb on - strandat 910.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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908,347 + GFF844 0.46 -1.1
908,348 - GFF844 0.46 -0.6
908,348 - GFF844 0.46 +0.7
908,350 + GFF844 0.46 +0.9
908,455 + GFF844 0.54 +1.0
908,456 - GFF844 0.54 +0.9
908,776 + GFF844 0.77 +0.4
909,215 + +0.5
909,215 + +0.1
909,216 - -1.6
910,621 - -1.3

Or see this region's nucleotide sequence