Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF841 and GFF842 are separated by 50 nucleotides GFF842 and GFF843 are separated by 14 nucleotides GFF843 and GFF844 are separated by 23 nucleotides
GFF841 - RNA-binding protein Hfq, at 904,998 to 905,351
GFF841
GFF842 - D-alanine aminotransferase, at 905,402 to 906,259
GFF842
GFF843 - Trk system potassium uptake protein TrkH, at 906,274 to 907,686
GFF843
GFF844 - Trk system potassium uptake protein TrkA, at 907,710 to 909,086
GFF844
Position (kb) 906
907
908 Strain fitness (log2 ratio) -2
-1
0
1
2 at 905.299 kb on + strand, within GFF841 at 905.308 kb on + strand, within GFF841 at 905.308 kb on + strand, within GFF841 at 905.309 kb on - strand, within GFF841 at 905.334 kb on - strand at 905.606 kb on + strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.725 kb on - strand, within GFF842 at 905.902 kb on + strand, within GFF842 at 905.991 kb on + strand, within GFF842 at 905.992 kb on - strand, within GFF842 at 905.998 kb on + strand, within GFF842 at 905.998 kb on + strand, within GFF842 at 905.999 kb on - strand, within GFF842 at 906.064 kb on + strand, within GFF842 at 906.064 kb on + strand, within GFF842 at 906.064 kb on + strand, within GFF842 at 906.162 kb on + strand, within GFF842 at 906.184 kb on - strand at 906.228 kb on + strand at 906.228 kb on + strand at 906.228 kb on + strand at 906.229 kb on - strand at 906.229 kb on - strand at 906.229 kb on - strand at 906.229 kb on - strand at 906.244 kb on - strand at 906.430 kb on - strand, within GFF843 at 906.512 kb on + strand, within GFF843 at 906.512 kb on + strand, within GFF843 at 906.743 kb on + strand, within GFF843 at 906.743 kb on + strand, within GFF843 at 906.744 kb on - strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.097 kb on + strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.098 kb on - strand, within GFF843 at 907.279 kb on + strand, within GFF843 at 907.280 kb on - strand, within GFF843 at 908.071 kb on + strand, within GFF844 at 908.347 kb on + strand, within GFF844 at 908.348 kb on - strand, within GFF844 at 908.348 kb on - strand, within GFF844 at 908.350 kb on + strand, within GFF844 at 908.455 kb on + strand, within GFF844 at 908.456 kb on - strand, within GFF844
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 905,299 + GFF841 0.85 +0.5 905,308 + GFF841 0.88 +0.2 905,308 + GFF841 0.88 -0.8 905,309 - GFF841 0.88 +0.3 905,334 - -0.7 905,606 + GFF842 0.24 -0.3 905,725 - GFF842 0.38 +0.5 905,725 - GFF842 0.38 +0.8 905,725 - GFF842 0.38 -0.5 905,902 + GFF842 0.58 -0.7 905,991 + GFF842 0.69 +0.9 905,992 - GFF842 0.69 +0.4 905,998 + GFF842 0.69 -0.1 905,998 + GFF842 0.69 -0.9 905,999 - GFF842 0.70 -0.9 906,064 + GFF842 0.77 +0.2 906,064 + GFF842 0.77 +0.2 906,064 + GFF842 0.77 -0.6 906,162 + GFF842 0.89 +1.0 906,184 - +0.6 906,228 + -2.2 906,228 + +1.1 906,228 + +1.1 906,229 - -0.7 906,229 - -1.8 906,229 - +0.2 906,229 - -0.5 906,244 - -0.4 906,430 - GFF843 0.11 +0.9 906,512 + GFF843 0.17 +1.8 906,512 + GFF843 0.17 +1.2 906,743 + GFF843 0.33 +1.3 906,743 + GFF843 0.33 +0.1 906,744 - GFF843 0.33 +0.9 907,097 + GFF843 0.58 -0.6 907,097 + GFF843 0.58 -0.6 907,097 + GFF843 0.58 +0.2 907,097 + GFF843 0.58 +0.9 907,097 + GFF843 0.58 +1.2 907,097 + GFF843 0.58 +1.1 907,098 - GFF843 0.58 +0.2 907,098 - GFF843 0.58 +0.4 907,098 - GFF843 0.58 +0.1 907,098 - GFF843 0.58 +1.3 907,098 - GFF843 0.58 +0.5 907,279 + GFF843 0.71 +0.8 907,280 - GFF843 0.71 -0.2 908,071 + GFF844 0.26 -0.2 908,347 + GFF844 0.46 -1.1 908,348 - GFF844 0.46 -0.6 908,348 - GFF844 0.46 +0.7 908,350 + GFF844 0.46 +0.9 908,455 + GFF844 0.54 +1.0 908,456 - GFF844 0.54 +0.9
Or see this region's nucleotide sequence