Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF836 and GFF837 are separated by 762 nucleotides GFF837 and GFF838 are separated by 186 nucleotides GFF838 and GFF839 are separated by 126 nucleotides
GFF836 - Endolytic peptidoglycan transglycosylase RlpA, at 899,836 to 900,195
GFF836
GFF837 - hypothetical protein, at 900,958 to 901,821
GFF837
GFF838 - S-adenosyl-L-methionine-binding protein, at 902,008 to 902,472
GFF838
GFF839 - Nucleoside triphosphate pyrophosphohydrolase, at 902,599 to 903,447
GFF839
Position (kb) 900
901
902 Strain fitness (log2 ratio) -1
0
1 at 900.090 kb on - strand, within GFF836 at 900.090 kb on - strand, within GFF836 at 900.090 kb on - strand, within GFF836 at 900.187 kb on + strand at 900.187 kb on + strand at 900.187 kb on + strand at 900.188 kb on - strand at 900.188 kb on - strand at 900.593 kb on + strand at 901.294 kb on + strand, within GFF837 at 901.295 kb on - strand, within GFF837 at 901.819 kb on + strand at 902.222 kb on + strand, within GFF838 at 902.222 kb on + strand, within GFF838 at 902.378 kb on + strand, within GFF838 at 902.503 kb on - strand at 902.503 kb on - strand at 902.503 kb on - strand at 902.567 kb on + strand at 902.568 kb on - strand at 902.568 kb on - strand at 902.580 kb on + strand at 902.710 kb on + strand, within GFF839 at 902.728 kb on + strand, within GFF839 at 902.729 kb on - strand, within GFF839
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 900,090 - GFF836 0.71 +1.0 900,090 - GFF836 0.71 +0.3 900,090 - GFF836 0.71 -0.5 900,187 + -0.5 900,187 + -0.5 900,187 + -0.4 900,188 - +0.5 900,188 - +0.7 900,593 + +1.1 901,294 + GFF837 0.39 -1.2 901,295 - GFF837 0.39 -0.5 901,819 + -0.8 902,222 + GFF838 0.46 +0.8 902,222 + GFF838 0.46 -0.3 902,378 + GFF838 0.80 -0.3 902,503 - +0.7 902,503 - -0.8 902,503 - +0.7 902,567 + +0.8 902,568 - -0.2 902,568 - -0.4 902,580 + +0.3 902,710 + GFF839 0.13 -0.4 902,728 + GFF839 0.15 -0.8 902,729 - GFF839 0.15 +0.6
Or see this region's nucleotide sequence