Strain Fitness in Xanthobacter sp. DMC5 around GFF835

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF833 and GFF834 are separated by 208 nucleotidesGFF834 and GFF835 are separated by 160 nucleotidesGFF835 and GFF836 are separated by 86 nucleotides GFF833 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 895,521 to 896,495 GFF833 GFF834 - Integration host factor subunit alpha, at 896,704 to 897,021 GFF834 GFF835 - hypothetical protein, at 897,182 to 899,749 GFF835 GFF836 - Endolytic peptidoglycan transglycosylase RlpA, at 899,836 to 900,195 GFF836 Position (kb) 897 898 899 900Strain fitness (log2 ratio) -1 0 1at 896.533 kb on + strandat 897.055 kb on - strandat 897.129 kb on + strandat 899.757 kb on - strandat 900.090 kb on - strand, within GFF836at 900.090 kb on - strand, within GFF836at 900.090 kb on - strand, within GFF836at 900.187 kb on + strandat 900.187 kb on + strandat 900.187 kb on + strandat 900.188 kb on - strandat 900.188 kb on - strandat 900.593 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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896,533 + -0.8
897,055 - +0.2
897,129 + +0.3
899,757 - -1.5
900,090 - GFF836 0.71 +1.0
900,090 - GFF836 0.71 +0.3
900,090 - GFF836 0.71 -0.5
900,187 + -0.5
900,187 + -0.5
900,187 + -0.4
900,188 - +0.5
900,188 - +0.7
900,593 + +1.1

Or see this region's nucleotide sequence