Strain Fitness in Xanthobacter sp. DMC5 around GFF833

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF832 and GFF833 overlap by 4 nucleotidesGFF833 and GFF834 are separated by 208 nucleotidesGFF834 and GFF835 are separated by 160 nucleotides GFF832 - Phosphate acyltransferase, at 894,454 to 895,524 GFF832 GFF833 - 3-oxoacyl-[acyl-carrier-protein] synthase 3, at 895,521 to 896,495 GFF833 GFF834 - Integration host factor subunit alpha, at 896,704 to 897,021 GFF834 GFF835 - hypothetical protein, at 897,182 to 899,749 GFF835 Position (kb) 895 896 897Strain fitness (log2 ratio) -1 0 1at 895.454 kb on + strandat 895.454 kb on + strandat 896.533 kb on + strandat 897.055 kb on - strandat 897.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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895,454 + -1.5
895,454 + +0.2
896,533 + -0.8
897,055 - +0.2
897,129 + +0.3

Or see this region's nucleotide sequence