Strain Fitness in Xanthobacter sp. DMC5 around GFF821

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF820 and GFF821 are separated by 370 nucleotidesGFF821 and GFF822 are separated by 60 nucleotidesGFF822 and GFF823 are separated by 77 nucleotides GFF820 - hypothetical protein, at 886,020 to 886,511 GFF820 GFF821 - hypothetical protein, at 886,882 to 887,565 GFF821 GFF822 - hypothetical protein, at 887,626 to 888,195 GFF822 GFF823 - hypothetical protein, at 888,273 to 888,650 GFF823 Position (kb) 886 887 888Strain fitness (log2 ratio) -1 0 1at 886.016 kb on + strandat 886.665 kb on + strandat 886.665 kb on + strandat 886.802 kb on + strandat 886.931 kb on - strandat 887.311 kb on + strand, within GFF821at 887.440 kb on + strand, within GFF821at 887.441 kb on - strand, within GFF821at 887.551 kb on + strandat 887.552 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
886,016 + +0.5
886,665 + +0.1
886,665 + -0.1
886,802 + -0.7
886,931 - +0.0
887,311 + GFF821 0.63 +1.0
887,440 + GFF821 0.82 -0.3
887,441 - GFF821 0.82 -0.3
887,551 + -0.8
887,552 - +0.1

Or see this region's nucleotide sequence