Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF78 and GFF79 are separated by 10 nucleotides GFF79 and GFF80 are separated by 30 nucleotides GFF80 and GFF81 are separated by 64 nucleotides
GFF78 - Holliday junction ATP-dependent DNA helicase RuvA, at 86,775 to 87,395
GFF78
GFF79 - hypothetical protein, at 87,406 to 87,837
GFF79
GFF80 - Crossover junction endodeoxyribonuclease RuvC, at 87,868 to 88,377
GFF80
GFF81 - hypothetical protein, at 88,442 to 91,012
GFF81
Position (kb) 87
88
89 Strain fitness (log2 ratio) -2
-1
0
1
2 at 87.320 kb on - strand, within GFF78 at 87.468 kb on + strand, within GFF79 at 87.468 kb on + strand, within GFF79 at 87.468 kb on + strand, within GFF79 at 87.469 kb on - strand, within GFF79 at 87.777 kb on + strand, within GFF79 at 87.777 kb on + strand, within GFF79 at 87.778 kb on - strand, within GFF79 at 87.778 kb on - strand, within GFF79 at 87.779 kb on + strand, within GFF79 at 87.779 kb on + strand, within GFF79 at 87.780 kb on - strand, within GFF79 at 87.780 kb on - strand, within GFF79 at 87.830 kb on + strand at 87.830 kb on + strand at 87.830 kb on + strand at 87.869 kb on + strand at 88.552 kb on + strand at 88.746 kb on + strand, within GFF81 at 88.747 kb on - strand, within GFF81 at 88.747 kb on - strand, within GFF81 at 88.747 kb on - strand, within GFF81 at 88.764 kb on + strand, within GFF81 at 88.924 kb on - strand, within GFF81 at 89.017 kb on - strand, within GFF81
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 87,320 - GFF78 0.88 +0.4 87,468 + GFF79 0.14 -0.3 87,468 + GFF79 0.14 -0.3 87,468 + GFF79 0.14 +0.0 87,469 - GFF79 0.15 +0.9 87,777 + GFF79 0.86 +0.7 87,777 + GFF79 0.86 +0.2 87,778 - GFF79 0.86 +0.6 87,778 - GFF79 0.86 -0.0 87,779 + GFF79 0.86 +0.9 87,779 + GFF79 0.86 +0.2 87,780 - GFF79 0.87 -0.6 87,780 - GFF79 0.87 +0.3 87,830 + -0.7 87,830 + -0.1 87,830 + -0.6 87,869 + -0.2 88,552 + -1.8 88,746 + GFF81 0.12 -1.1 88,747 - GFF81 0.12 +2.2 88,747 - GFF81 0.12 -1.3 88,747 - GFF81 0.12 +1.0 88,764 + GFF81 0.13 +0.2 88,924 - GFF81 0.19 -0.9 89,017 - GFF81 0.22 -1.1
Or see this region's nucleotide sequence