Strain Fitness in Xanthobacter sp. DMC5 around GFF798

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF797 and GFF798 are separated by 29 nucleotidesGFF798 and GFF799 are separated by 48 nucleotides GFF797 - Periplasmic dipeptide transport protein, at 849,794 to 851,404 GFF797 GFF798 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 851,434 to 852,585 GFF798 GFF799 - Vitamin B12 import ATP-binding protein BtuD, at 852,634 to 853,644 GFF799 Position (kb) 851 852 853Strain fitness (log2 ratio) -2 -1 0 1 2at 850.668 kb on + strand, within GFF797at 850.668 kb on + strand, within GFF797at 850.668 kb on + strand, within GFF797at 850.669 kb on - strand, within GFF797at 850.746 kb on + strand, within GFF797at 850.746 kb on + strand, within GFF797at 850.767 kb on + strand, within GFF797at 850.767 kb on + strand, within GFF797at 850.768 kb on - strand, within GFF797at 850.884 kb on + strand, within GFF797at 850.884 kb on + strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 851.010 kb on + strand, within GFF797at 851.010 kb on + strand, within GFF797at 851.010 kb on + strand, within GFF797at 851.011 kb on - strand, within GFF797at 851.157 kb on + strand, within GFF797at 851.200 kb on - strand, within GFF797at 851.200 kb on - strand, within GFF797at 851.200 kb on - strand, within GFF797at 851.218 kb on - strand, within GFF797at 851.218 kb on - strand, within GFF797at 851.536 kb on - strandat 851.723 kb on + strand, within GFF798at 851.724 kb on - strand, within GFF798at 851.724 kb on - strand, within GFF798at 851.912 kb on + strand, within GFF798at 851.913 kb on - strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 852.083 kb on + strand, within GFF798at 852.084 kb on - strand, within GFF798at 852.084 kb on - strand, within GFF798at 852.180 kb on + strand, within GFF798at 852.180 kb on + strand, within GFF798at 852.180 kb on + strand, within GFF798at 852.181 kb on - strand, within GFF798at 852.181 kb on - strand, within GFF798at 852.327 kb on - strand, within GFF798at 852.428 kb on + strand, within GFF798at 852.429 kb on - strand, within GFF798at 852.551 kb on + strandat 852.902 kb on + strand, within GFF799at 852.902 kb on + strand, within GFF799at 852.902 kb on + strand, within GFF799at 852.902 kb on + strand, within GFF799at 852.903 kb on - strand, within GFF799at 852.965 kb on + strand, within GFF799at 852.965 kb on + strand, within GFF799at 852.965 kb on + strand, within GFF799at 852.965 kb on + strand, within GFF799at 852.965 kb on + strand, within GFF799at 852.965 kb on + strand, within GFF799at 852.965 kb on + strand, within GFF799at 852.966 kb on - strand, within GFF799at 852.966 kb on - strand, within GFF799at 852.966 kb on - strand, within GFF799at 852.966 kb on - strand, within GFF799at 852.966 kb on - strand, within GFF799at 853.028 kb on + strand, within GFF799at 853.028 kb on + strand, within GFF799at 853.028 kb on + strand, within GFF799

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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850,668 + GFF797 0.54 +0.2
850,668 + GFF797 0.54 +0.5
850,668 + GFF797 0.54 +0.3
850,669 - GFF797 0.54 +0.2
850,746 + GFF797 0.59 +2.3
850,746 + GFF797 0.59 -0.1
850,767 + GFF797 0.60 +0.3
850,767 + GFF797 0.60 +0.4
850,768 - GFF797 0.60 -0.0
850,884 + GFF797 0.68 -1.0
850,884 + GFF797 0.68 -1.4
850,885 - GFF797 0.68 +0.0
850,885 - GFF797 0.68 -1.0
850,885 - GFF797 0.68 -0.5
850,885 - GFF797 0.68 +0.5
850,885 - GFF797 0.68 -0.7
850,885 - GFF797 0.68 +2.0
851,010 + GFF797 0.75 +1.7
851,010 + GFF797 0.75 +0.8
851,010 + GFF797 0.75 -0.7
851,011 - GFF797 0.76 +0.0
851,157 + GFF797 0.85 -1.0
851,200 - GFF797 0.87 +0.5
851,200 - GFF797 0.87 -0.1
851,200 - GFF797 0.87 +0.0
851,218 - GFF797 0.88 +0.1
851,218 - GFF797 0.88 +0.4
851,536 - +0.0
851,723 + GFF798 0.25 +1.4
851,724 - GFF798 0.25 -0.3
851,724 - GFF798 0.25 +0.1
851,912 + GFF798 0.41 -0.6
851,913 - GFF798 0.42 +0.2
851,984 + GFF798 0.48 -1.4
851,984 + GFF798 0.48 -0.3
851,984 + GFF798 0.48 +0.3
851,984 + GFF798 0.48 +0.1
851,984 + GFF798 0.48 -1.2
851,984 + GFF798 0.48 +0.3
851,985 - GFF798 0.48 +0.2
851,985 - GFF798 0.48 +0.1
851,985 - GFF798 0.48 -0.1
851,985 - GFF798 0.48 -0.2
851,985 - GFF798 0.48 +1.0
851,985 - GFF798 0.48 -0.8
852,083 + GFF798 0.56 -1.2
852,084 - GFF798 0.56 -0.3
852,084 - GFF798 0.56 +1.3
852,180 + GFF798 0.65 -0.3
852,180 + GFF798 0.65 -0.3
852,180 + GFF798 0.65 +0.5
852,181 - GFF798 0.65 -0.6
852,181 - GFF798 0.65 -2.1
852,327 - GFF798 0.78 +0.5
852,428 + GFF798 0.86 -0.2
852,429 - GFF798 0.86 -0.7
852,551 + -0.3
852,902 + GFF799 0.27 +0.8
852,902 + GFF799 0.27 +1.7
852,902 + GFF799 0.27 +1.6
852,902 + GFF799 0.27 +0.3
852,903 - GFF799 0.27 +0.9
852,965 + GFF799 0.33 -0.7
852,965 + GFF799 0.33 +0.3
852,965 + GFF799 0.33 +0.4
852,965 + GFF799 0.33 -0.9
852,965 + GFF799 0.33 -1.3
852,965 + GFF799 0.33 +0.9
852,965 + GFF799 0.33 +0.3
852,966 - GFF799 0.33 +0.2
852,966 - GFF799 0.33 -0.5
852,966 - GFF799 0.33 +0.2
852,966 - GFF799 0.33 -0.3
852,966 - GFF799 0.33 +0.3
853,028 + GFF799 0.39 -0.0
853,028 + GFF799 0.39 -0.3
853,028 + GFF799 0.39 -0.5

Or see this region's nucleotide sequence