Strain Fitness in Xanthobacter sp. DMC5 around GFF797

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF795 and GFF796 are separated by 115 nucleotidesGFF796 and GFF797 are separated by 55 nucleotidesGFF797 and GFF798 are separated by 29 nucleotides GFF795 - Thiosulfate sulfurtransferase GlpE, at 847,278 to 848,876 GFF795 GFF796 - 5-keto-D-gluconate 5-reductase, at 848,992 to 849,738 GFF796 GFF797 - Periplasmic dipeptide transport protein, at 849,794 to 851,404 GFF797 GFF798 - FMNH(2)-dependent dimethylsulfone monooxygenase, at 851,434 to 852,585 GFF798 Position (kb) 849 850 851 852Strain fitness (log2 ratio) -2 -1 0 1 2at 848.802 kb on + strandat 848.803 kb on - strandat 848.803 kb on - strandat 848.803 kb on - strandat 848.932 kb on + strandat 848.933 kb on - strandat 848.933 kb on - strandat 848.933 kb on - strandat 848.933 kb on - strandat 848.977 kb on + strandat 848.977 kb on + strandat 848.978 kb on - strandat 848.978 kb on - strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.989 kb on - strandat 849.059 kb on + strandat 849.059 kb on + strandat 849.059 kb on + strandat 849.059 kb on + strandat 849.060 kb on - strandat 849.060 kb on - strandat 849.060 kb on - strandat 849.061 kb on + strandat 849.168 kb on + strand, within GFF796at 849.175 kb on - strand, within GFF796at 849.175 kb on - strand, within GFF796at 849.175 kb on - strand, within GFF796at 849.176 kb on + strand, within GFF796at 849.177 kb on - strand, within GFF796at 849.481 kb on + strand, within GFF796at 849.481 kb on + strand, within GFF796at 849.481 kb on + strand, within GFF796at 849.482 kb on - strand, within GFF796at 849.482 kb on - strand, within GFF796at 849.849 kb on + strandat 849.850 kb on - strandat 849.850 kb on - strandat 849.850 kb on - strandat 850.045 kb on - strand, within GFF797at 850.137 kb on + strand, within GFF797at 850.137 kb on + strand, within GFF797at 850.138 kb on - strand, within GFF797at 850.138 kb on - strand, within GFF797at 850.138 kb on - strand, within GFF797at 850.140 kb on + strand, within GFF797at 850.140 kb on + strand, within GFF797at 850.165 kb on - strand, within GFF797at 850.203 kb on + strand, within GFF797at 850.203 kb on + strand, within GFF797at 850.380 kb on + strand, within GFF797at 850.380 kb on + strand, within GFF797at 850.380 kb on + strand, within GFF797at 850.381 kb on - strand, within GFF797at 850.668 kb on + strand, within GFF797at 850.668 kb on + strand, within GFF797at 850.668 kb on + strand, within GFF797at 850.669 kb on - strand, within GFF797at 850.746 kb on + strand, within GFF797at 850.746 kb on + strand, within GFF797at 850.767 kb on + strand, within GFF797at 850.767 kb on + strand, within GFF797at 850.768 kb on - strand, within GFF797at 850.884 kb on + strand, within GFF797at 850.884 kb on + strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 850.885 kb on - strand, within GFF797at 851.010 kb on + strand, within GFF797at 851.010 kb on + strand, within GFF797at 851.010 kb on + strand, within GFF797at 851.011 kb on - strand, within GFF797at 851.157 kb on + strand, within GFF797at 851.200 kb on - strand, within GFF797at 851.200 kb on - strand, within GFF797at 851.200 kb on - strand, within GFF797at 851.218 kb on - strand, within GFF797at 851.218 kb on - strand, within GFF797at 851.536 kb on - strandat 851.723 kb on + strand, within GFF798at 851.724 kb on - strand, within GFF798at 851.724 kb on - strand, within GFF798at 851.912 kb on + strand, within GFF798at 851.913 kb on - strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.984 kb on + strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 851.985 kb on - strand, within GFF798at 852.083 kb on + strand, within GFF798at 852.084 kb on - strand, within GFF798at 852.084 kb on - strand, within GFF798at 852.180 kb on + strand, within GFF798at 852.180 kb on + strand, within GFF798at 852.180 kb on + strand, within GFF798at 852.181 kb on - strand, within GFF798at 852.181 kb on - strand, within GFF798at 852.327 kb on - strand, within GFF798

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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848,802 + -0.5
848,803 - -0.6
848,803 - +0.6
848,803 - -0.1
848,932 + -2.5
848,933 - -0.0
848,933 - -0.4
848,933 - +0.7
848,933 - +0.1
848,977 + -0.4
848,977 + -0.7
848,978 - -0.2
848,978 - -0.2
848,988 + -1.8
848,988 + +0.3
848,989 - +0.1
849,059 + -0.6
849,059 + -0.1
849,059 + +1.1
849,059 + -0.0
849,060 - +0.6
849,060 - +0.1
849,060 - +1.0
849,061 + -0.6
849,168 + GFF796 0.24 -1.4
849,175 - GFF796 0.24 -0.7
849,175 - GFF796 0.24 -0.3
849,175 - GFF796 0.24 -0.1
849,176 + GFF796 0.25 -0.5
849,177 - GFF796 0.25 +0.1
849,481 + GFF796 0.65 -1.2
849,481 + GFF796 0.65 -0.8
849,481 + GFF796 0.65 -0.1
849,482 - GFF796 0.66 +1.1
849,482 - GFF796 0.66 -0.8
849,849 + -1.0
849,850 - -0.8
849,850 - +0.2
849,850 - +0.5
850,045 - GFF797 0.16 -0.5
850,137 + GFF797 0.21 -0.6
850,137 + GFF797 0.21 -0.5
850,138 - GFF797 0.21 -1.7
850,138 - GFF797 0.21 +1.3
850,138 - GFF797 0.21 +0.8
850,140 + GFF797 0.21 -0.5
850,140 + GFF797 0.21 -0.7
850,165 - GFF797 0.23 -0.2
850,203 + GFF797 0.25 -0.2
850,203 + GFF797 0.25 -0.8
850,380 + GFF797 0.36 +0.5
850,380 + GFF797 0.36 +0.8
850,380 + GFF797 0.36 +0.1
850,381 - GFF797 0.36 -0.9
850,668 + GFF797 0.54 +0.2
850,668 + GFF797 0.54 +0.5
850,668 + GFF797 0.54 +0.3
850,669 - GFF797 0.54 +0.2
850,746 + GFF797 0.59 +2.3
850,746 + GFF797 0.59 -0.1
850,767 + GFF797 0.60 +0.3
850,767 + GFF797 0.60 +0.4
850,768 - GFF797 0.60 -0.0
850,884 + GFF797 0.68 -1.0
850,884 + GFF797 0.68 -1.4
850,885 - GFF797 0.68 +0.0
850,885 - GFF797 0.68 -1.0
850,885 - GFF797 0.68 -0.5
850,885 - GFF797 0.68 +0.5
850,885 - GFF797 0.68 -0.7
850,885 - GFF797 0.68 +2.0
851,010 + GFF797 0.75 +1.7
851,010 + GFF797 0.75 +0.8
851,010 + GFF797 0.75 -0.7
851,011 - GFF797 0.76 +0.0
851,157 + GFF797 0.85 -1.0
851,200 - GFF797 0.87 +0.5
851,200 - GFF797 0.87 -0.1
851,200 - GFF797 0.87 +0.0
851,218 - GFF797 0.88 +0.1
851,218 - GFF797 0.88 +0.4
851,536 - +0.0
851,723 + GFF798 0.25 +1.4
851,724 - GFF798 0.25 -0.3
851,724 - GFF798 0.25 +0.1
851,912 + GFF798 0.41 -0.6
851,913 - GFF798 0.42 +0.2
851,984 + GFF798 0.48 -1.4
851,984 + GFF798 0.48 -0.3
851,984 + GFF798 0.48 +0.3
851,984 + GFF798 0.48 +0.1
851,984 + GFF798 0.48 -1.2
851,984 + GFF798 0.48 +0.3
851,985 - GFF798 0.48 +0.2
851,985 - GFF798 0.48 +0.1
851,985 - GFF798 0.48 -0.1
851,985 - GFF798 0.48 -0.2
851,985 - GFF798 0.48 +1.0
851,985 - GFF798 0.48 -0.8
852,083 + GFF798 0.56 -1.2
852,084 - GFF798 0.56 -0.3
852,084 - GFF798 0.56 +1.3
852,180 + GFF798 0.65 -0.3
852,180 + GFF798 0.65 -0.3
852,180 + GFF798 0.65 +0.5
852,181 - GFF798 0.65 -0.6
852,181 - GFF798 0.65 -2.1
852,327 - GFF798 0.78 +0.5

Or see this region's nucleotide sequence