Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF791 and GFF792 are separated by 228 nucleotides GFF792 and GFF793 are separated by 159 nucleotides GFF793 and GFF794 are separated by 128 nucleotides
GFF791 - HTH-type transcriptional regulator CymR, at 843,561 to 844,007
GFF791
GFF792 - hypothetical protein, at 844,236 to 844,493
GFF792
GFF793 - Oligopeptide-binding protein AppA, at 844,653 to 846,260
GFF793
GFF794 - Decarboxylase NovR, at 846,389 to 847,216
GFF794
Position (kb) 844
845
846
847 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 843.655 kb on + strand, within GFF791 at 843.655 kb on + strand, within GFF791 at 843.656 kb on - strand, within GFF791 at 843.656 kb on - strand, within GFF791 at 843.719 kb on - strand, within GFF791 at 843.986 kb on - strand at 843.986 kb on - strand at 844.655 kb on - strand at 844.655 kb on - strand at 844.670 kb on + strand at 844.671 kb on - strand at 844.676 kb on + strand at 844.676 kb on + strand at 844.676 kb on + strand at 844.677 kb on - strand at 844.732 kb on + strand at 844.732 kb on + strand at 844.732 kb on + strand at 844.732 kb on + strand at 844.985 kb on + strand, within GFF793 at 844.986 kb on - strand, within GFF793 at 845.002 kb on + strand, within GFF793 at 845.003 kb on - strand, within GFF793 at 845.003 kb on - strand, within GFF793 at 845.012 kb on - strand, within GFF793 at 845.093 kb on - strand, within GFF793 at 845.093 kb on - strand, within GFF793 at 845.176 kb on + strand, within GFF793 at 845.224 kb on + strand, within GFF793 at 845.225 kb on - strand, within GFF793 at 845.225 kb on - strand, within GFF793 at 845.404 kb on + strand, within GFF793 at 845.404 kb on + strand, within GFF793 at 845.566 kb on + strand, within GFF793 at 845.585 kb on - strand, within GFF793 at 845.605 kb on + strand, within GFF793 at 845.605 kb on + strand, within GFF793 at 845.605 kb on + strand, within GFF793 at 845.605 kb on + strand, within GFF793 at 845.605 kb on + strand, within GFF793 at 845.606 kb on - strand, within GFF793 at 845.606 kb on - strand, within GFF793 at 845.812 kb on + strand, within GFF793 at 845.813 kb on - strand, within GFF793 at 845.813 kb on - strand, within GFF793 at 846.055 kb on + strand, within GFF793 at 846.055 kb on + strand, within GFF793 at 846.056 kb on - strand, within GFF793 at 846.056 kb on - strand, within GFF793 at 846.056 kb on - strand, within GFF793 at 846.339 kb on + strand at 846.527 kb on + strand, within GFF794 at 846.684 kb on - strand, within GFF794 at 846.836 kb on + strand, within GFF794 at 846.836 kb on + strand, within GFF794 at 846.836 kb on + strand, within GFF794 at 846.837 kb on - strand, within GFF794 at 846.849 kb on - strand, within GFF794 at 846.849 kb on - strand, within GFF794 at 846.849 kb on - strand, within GFF794 at 846.850 kb on + strand, within GFF794 at 846.850 kb on + strand, within GFF794 at 846.914 kb on + strand, within GFF794 at 846.916 kb on + strand, within GFF794 at 846.916 kb on + strand, within GFF794 at 846.916 kb on + strand, within GFF794 at 846.917 kb on - strand, within GFF794 at 846.974 kb on + strand, within GFF794 at 846.974 kb on + strand, within GFF794 at 846.974 kb on + strand, within GFF794 at 846.974 kb on + strand, within GFF794 at 846.975 kb on - strand, within GFF794 at 847.020 kb on - strand, within GFF794 at 847.205 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 843,655 + GFF791 0.21 -0.7 843,655 + GFF791 0.21 +0.5 843,656 - GFF791 0.21 -0.3 843,656 - GFF791 0.21 -0.6 843,719 - GFF791 0.35 +0.2 843,986 - -1.0 843,986 - -0.6 844,655 - -0.5 844,655 - +0.3 844,670 + -0.6 844,671 - -0.7 844,676 + -0.1 844,676 + +0.2 844,676 + -0.4 844,677 - -0.9 844,732 + +1.3 844,732 + -0.3 844,732 + -0.6 844,732 + -0.1 844,985 + GFF793 0.21 +1.1 844,986 - GFF793 0.21 -0.3 845,002 + GFF793 0.22 +0.0 845,003 - GFF793 0.22 +0.6 845,003 - GFF793 0.22 -0.4 845,012 - GFF793 0.22 +1.7 845,093 - GFF793 0.27 +0.6 845,093 - GFF793 0.27 +1.0 845,176 + GFF793 0.33 +0.6 845,224 + GFF793 0.36 -0.3 845,225 - GFF793 0.36 +0.0 845,225 - GFF793 0.36 +1.3 845,404 + GFF793 0.47 +0.3 845,404 + GFF793 0.47 -0.4 845,566 + GFF793 0.57 -0.1 845,585 - GFF793 0.58 +0.9 845,605 + GFF793 0.59 -0.5 845,605 + GFF793 0.59 +0.3 845,605 + GFF793 0.59 -1.8 845,605 + GFF793 0.59 -0.2 845,605 + GFF793 0.59 -0.3 845,606 - GFF793 0.59 -1.3 845,606 - GFF793 0.59 -0.3 845,812 + GFF793 0.72 +0.0 845,813 - GFF793 0.72 -0.1 845,813 - GFF793 0.72 +1.5 846,055 + GFF793 0.87 -1.2 846,055 + GFF793 0.87 -1.9 846,056 - GFF793 0.87 -0.0 846,056 - GFF793 0.87 -0.2 846,056 - GFF793 0.87 -1.7 846,339 + +0.7 846,527 + GFF794 0.17 -1.2 846,684 - GFF794 0.36 +0.9 846,836 + GFF794 0.54 +0.4 846,836 + GFF794 0.54 -0.3 846,836 + GFF794 0.54 -2.0 846,837 - GFF794 0.54 +0.8 846,849 - GFF794 0.56 +0.5 846,849 - GFF794 0.56 -0.1 846,849 - GFF794 0.56 +0.1 846,850 + GFF794 0.56 -0.4 846,850 + GFF794 0.56 +0.4 846,914 + GFF794 0.63 -1.2 846,916 + GFF794 0.64 -1.3 846,916 + GFF794 0.64 -0.3 846,916 + GFF794 0.64 -0.6 846,917 - GFF794 0.64 -0.3 846,974 + GFF794 0.71 -2.1 846,974 + GFF794 0.71 -3.0 846,974 + GFF794 0.71 -0.3 846,974 + GFF794 0.71 -0.6 846,975 - GFF794 0.71 +0.1 847,020 - GFF794 0.76 +1.9 847,205 + +1.2
Or see this region's nucleotide sequence