Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF787 and GFF788 are separated by 24 nucleotides GFF788 and GFF789 overlap by 4 nucleotides GFF789 and GFF790 overlap by 4 nucleotides GFF790 and GFF791 are separated by 125 nucleotides
GFF787 - hypothetical protein, at 839,802 to 841,004
GFF787
GFF788 - Bicarbonate transport ATP-binding protein CmpD, at 841,029 to 841,796
GFF788
GFF789 - hypothetical protein, at 841,793 to 842,872
GFF789
GFF790 - hypothetical protein, at 842,869 to 843,435
GFF790
GFF791 - HTH-type transcriptional regulator CymR, at 843,561 to 844,007
GFF791
Position (kb) 841
842
843 Strain fitness (log2 ratio) -1
0
1 at 840.857 kb on - strand, within GFF787 at 840.947 kb on - strand at 841.053 kb on + strand at 841.053 kb on + strand at 841.053 kb on + strand at 841.053 kb on + strand at 841.054 kb on - strand at 841.054 kb on - strand at 841.647 kb on + strand, within GFF788 at 841.647 kb on + strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.917 kb on + strand, within GFF789 at 841.918 kb on - strand, within GFF789 at 841.918 kb on - strand, within GFF789 at 841.918 kb on - strand, within GFF789 at 842.600 kb on - strand, within GFF789 at 842.616 kb on + strand, within GFF789 at 842.616 kb on + strand, within GFF789 at 842.617 kb on - strand, within GFF789 at 842.625 kb on + strand, within GFF789 at 842.626 kb on - strand, within GFF789 at 842.626 kb on - strand, within GFF789 at 842.626 kb on - strand, within GFF789 at 842.825 kb on - strand at 843.296 kb on + strand, within GFF790 at 843.296 kb on + strand, within GFF790 at 843.296 kb on + strand, within GFF790 at 843.297 kb on - strand, within GFF790 at 843.297 kb on - strand, within GFF790 at 843.297 kb on - strand, within GFF790 at 843.487 kb on - strand at 843.508 kb on + strand at 843.509 kb on - strand at 843.565 kb on - strand at 843.568 kb on + strand at 843.569 kb on - strand at 843.569 kb on - strand at 843.655 kb on + strand, within GFF791 at 843.655 kb on + strand, within GFF791 at 843.656 kb on - strand, within GFF791 at 843.656 kb on - strand, within GFF791 at 843.719 kb on - strand, within GFF791
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 840,857 - GFF787 0.88 +0.4 840,947 - -0.9 841,053 + +0.4 841,053 + -0.7 841,053 + +0.7 841,053 + +0.5 841,054 - -1.3 841,054 - +1.7 841,647 + GFF788 0.80 +0.2 841,647 + GFF788 0.80 -1.7 841,648 - GFF788 0.81 +1.5 841,648 - GFF788 0.81 +0.7 841,648 - GFF788 0.81 -0.5 841,648 - GFF788 0.81 -0.7 841,917 + GFF789 0.11 +0.6 841,918 - GFF789 0.12 -0.7 841,918 - GFF789 0.12 -0.2 841,918 - GFF789 0.12 -1.2 842,600 - GFF789 0.75 -0.1 842,616 + GFF789 0.76 -0.3 842,616 + GFF789 0.76 +1.1 842,617 - GFF789 0.76 +0.9 842,625 + GFF789 0.77 +0.4 842,626 - GFF789 0.77 -0.5 842,626 - GFF789 0.77 +1.5 842,626 - GFF789 0.77 -0.8 842,825 - +0.2 843,296 + GFF790 0.75 +0.6 843,296 + GFF790 0.75 +1.7 843,296 + GFF790 0.75 +0.2 843,297 - GFF790 0.75 -1.4 843,297 - GFF790 0.75 +0.5 843,297 - GFF790 0.75 -0.4 843,487 - +1.0 843,508 + +0.3 843,509 - -0.3 843,565 - -0.8 843,568 + -1.1 843,569 - +0.6 843,569 - -0.6 843,655 + GFF791 0.21 -0.7 843,655 + GFF791 0.21 +0.5 843,656 - GFF791 0.21 -0.3 843,656 - GFF791 0.21 -0.6 843,719 - GFF791 0.35 +0.2
Or see this region's nucleotide sequence