Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF786 and GFF787 overlap by 4 nucleotides GFF787 and GFF788 are separated by 24 nucleotides GFF788 and GFF789 overlap by 4 nucleotides
GFF786 - Bicarbonate transport system permease protein CmpB, at 838,978 to 839,805
GFF786
GFF787 - hypothetical protein, at 839,802 to 841,004
GFF787
GFF788 - Bicarbonate transport ATP-binding protein CmpD, at 841,029 to 841,796
GFF788
GFF789 - hypothetical protein, at 841,793 to 842,872
GFF789
Position (kb) 839
840
841
842 Strain fitness (log2 ratio) -2
-1
0
1 at 838.831 kb on + strand at 838.955 kb on + strand at 839.070 kb on - strand, within GFF786 at 839.102 kb on + strand, within GFF786 at 839.315 kb on - strand, within GFF786 at 839.348 kb on + strand, within GFF786 at 839.348 kb on + strand, within GFF786 at 839.348 kb on + strand, within GFF786 at 839.349 kb on - strand, within GFF786 at 839.349 kb on - strand, within GFF786 at 839.543 kb on + strand, within GFF786 at 839.543 kb on + strand, within GFF786 at 839.543 kb on + strand, within GFF786 at 839.544 kb on - strand, within GFF786 at 839.544 kb on - strand, within GFF786 at 839.544 kb on - strand, within GFF786 at 840.001 kb on + strand, within GFF787 at 840.002 kb on - strand, within GFF787 at 840.079 kb on + strand, within GFF787 at 840.080 kb on - strand, within GFF787 at 840.145 kb on + strand, within GFF787 at 840.388 kb on + strand, within GFF787 at 840.388 kb on + strand, within GFF787 at 840.547 kb on + strand, within GFF787 at 840.548 kb on - strand, within GFF787 at 840.857 kb on - strand, within GFF787 at 840.947 kb on - strand at 841.053 kb on + strand at 841.053 kb on + strand at 841.053 kb on + strand at 841.053 kb on + strand at 841.054 kb on - strand at 841.054 kb on - strand at 841.647 kb on + strand, within GFF788 at 841.647 kb on + strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.648 kb on - strand, within GFF788 at 841.917 kb on + strand, within GFF789 at 841.918 kb on - strand, within GFF789 at 841.918 kb on - strand, within GFF789 at 841.918 kb on - strand, within GFF789
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 838,831 + -1.9 838,955 + +0.3 839,070 - GFF786 0.11 -0.5 839,102 + GFF786 0.15 +0.7 839,315 - GFF786 0.41 +0.2 839,348 + GFF786 0.45 +0.2 839,348 + GFF786 0.45 +0.3 839,348 + GFF786 0.45 -0.2 839,349 - GFF786 0.45 +0.5 839,349 - GFF786 0.45 -1.0 839,543 + GFF786 0.68 +0.9 839,543 + GFF786 0.68 -0.3 839,543 + GFF786 0.68 -1.2 839,544 - GFF786 0.68 -0.4 839,544 - GFF786 0.68 -0.1 839,544 - GFF786 0.68 +0.9 840,001 + GFF787 0.17 +0.6 840,002 - GFF787 0.17 -0.1 840,079 + GFF787 0.23 -0.9 840,080 - GFF787 0.23 -0.3 840,145 + GFF787 0.29 +0.8 840,388 + GFF787 0.49 +0.6 840,388 + GFF787 0.49 -0.6 840,547 + GFF787 0.62 -0.0 840,548 - GFF787 0.62 +1.7 840,857 - GFF787 0.88 +0.4 840,947 - -0.9 841,053 + +0.4 841,053 + -0.7 841,053 + +0.7 841,053 + +0.5 841,054 - -1.3 841,054 - +1.7 841,647 + GFF788 0.80 +0.2 841,647 + GFF788 0.80 -1.7 841,648 - GFF788 0.81 +1.5 841,648 - GFF788 0.81 +0.7 841,648 - GFF788 0.81 -0.5 841,648 - GFF788 0.81 -0.7 841,917 + GFF789 0.11 +0.6 841,918 - GFF789 0.12 -0.7 841,918 - GFF789 0.12 -0.2 841,918 - GFF789 0.12 -1.2
Or see this region's nucleotide sequence