Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF779 and GFF780 are separated by 192 nucleotides GFF780 and GFF781 overlap by 4 nucleotides GFF781 and GFF782 are separated by 230 nucleotides
GFF779 - Alpha-ketoglutarate-dependent sulfate ester dioxygenase, at 831,395 to 832,363
GFF779
GFF780 - hypothetical protein, at 832,556 to 834,181
GFF780
GFF781 - hypothetical protein, at 834,178 to 834,501
GFF781
GFF782 - hypothetical protein, at 834,732 to 835,796
GFF782
Position (kb) 832
833
834
835 Strain fitness (log2 ratio) -2
-1
0
1
2 at 831.633 kb on + strand, within GFF779 at 831.633 kb on + strand, within GFF779 at 831.634 kb on - strand, within GFF779 at 831.822 kb on + strand, within GFF779 at 831.822 kb on + strand, within GFF779 at 831.823 kb on - strand, within GFF779 at 831.828 kb on + strand, within GFF779 at 831.828 kb on + strand, within GFF779 at 831.828 kb on + strand, within GFF779 at 831.828 kb on + strand, within GFF779 at 831.895 kb on - strand, within GFF779 at 831.895 kb on - strand, within GFF779 at 832.427 kb on + strand at 832.427 kb on + strand at 832.428 kb on - strand at 832.482 kb on - strand at 832.742 kb on + strand, within GFF780 at 832.743 kb on - strand, within GFF780 at 832.743 kb on - strand, within GFF780 at 832.943 kb on + strand, within GFF780 at 832.944 kb on - strand, within GFF780 at 832.945 kb on + strand, within GFF780 at 832.945 kb on + strand, within GFF780 at 832.945 kb on + strand, within GFF780 at 832.946 kb on - strand, within GFF780 at 832.946 kb on - strand, within GFF780 at 833.231 kb on + strand, within GFF780 at 833.231 kb on + strand, within GFF780 at 833.231 kb on + strand, within GFF780 at 833.232 kb on - strand, within GFF780 at 833.586 kb on - strand, within GFF780 at 833.586 kb on - strand, within GFF780 at 833.844 kb on - strand, within GFF780 at 833.990 kb on + strand, within GFF780 at 833.990 kb on + strand, within GFF780 at 833.991 kb on - strand, within GFF780 at 833.991 kb on - strand, within GFF780 at 834.326 kb on - strand, within GFF781 at 834.347 kb on - strand, within GFF781 at 834.347 kb on - strand, within GFF781 at 834.347 kb on - strand, within GFF781 at 834.418 kb on + strand, within GFF781 at 834.419 kb on - strand, within GFF781 at 834.499 kb on + strand at 834.499 kb on + strand at 834.500 kb on - strand at 834.500 kb on - strand at 834.775 kb on + strand at 834.776 kb on - strand at 834.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 831,633 + GFF779 0.25 -0.1 831,633 + GFF779 0.25 -1.8 831,634 - GFF779 0.25 -1.0 831,822 + GFF779 0.44 +0.4 831,822 + GFF779 0.44 +0.3 831,823 - GFF779 0.44 -0.1 831,828 + GFF779 0.45 -1.6 831,828 + GFF779 0.45 -0.4 831,828 + GFF779 0.45 -1.4 831,828 + GFF779 0.45 +2.2 831,895 - GFF779 0.52 +0.2 831,895 - GFF779 0.52 +0.5 832,427 + +1.5 832,427 + -0.7 832,428 - -2.2 832,482 - -0.5 832,742 + GFF780 0.11 +1.7 832,743 - GFF780 0.12 +0.9 832,743 - GFF780 0.12 -0.7 832,943 + GFF780 0.24 -0.1 832,944 - GFF780 0.24 +0.7 832,945 + GFF780 0.24 -0.3 832,945 + GFF780 0.24 -0.2 832,945 + GFF780 0.24 +0.5 832,946 - GFF780 0.24 +0.7 832,946 - GFF780 0.24 -1.0 833,231 + GFF780 0.42 -0.2 833,231 + GFF780 0.42 -0.4 833,231 + GFF780 0.42 -0.1 833,232 - GFF780 0.42 +0.3 833,586 - GFF780 0.63 +0.1 833,586 - GFF780 0.63 -0.2 833,844 - GFF780 0.79 -0.7 833,990 + GFF780 0.88 -1.2 833,990 + GFF780 0.88 -0.2 833,991 - GFF780 0.88 -0.8 833,991 - GFF780 0.88 -1.9 834,326 - GFF781 0.46 -0.4 834,347 - GFF781 0.52 +1.3 834,347 - GFF781 0.52 +0.6 834,347 - GFF781 0.52 -0.1 834,418 + GFF781 0.74 -0.6 834,419 - GFF781 0.74 +0.3 834,499 + -0.0 834,499 + +0.5 834,500 - +1.0 834,500 - -0.3 834,775 + -0.0 834,776 - -1.0 834,818 - +0.2
Or see this region's nucleotide sequence