Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF772 and GFF773 are separated by 174 nucleotides GFF773 and GFF774 overlap by 4 nucleotides
GFF772 - hypothetical protein, at 824,267 to 825,370
GFF772
GFF773 - hypothetical protein, at 825,545 to 826,384
GFF773
GFF774 - hypothetical protein, at 826,381 to 827,454
GFF774
Position (kb) 825
826
827 Strain fitness (log2 ratio) -1
0
1
2 at 824.599 kb on - strand, within GFF772 at 824.599 kb on - strand, within GFF772 at 824.628 kb on + strand, within GFF772 at 824.629 kb on - strand, within GFF772 at 824.655 kb on + strand, within GFF772 at 824.655 kb on + strand, within GFF772 at 824.656 kb on - strand, within GFF772 at 824.656 kb on - strand, within GFF772 at 824.656 kb on - strand, within GFF772 at 824.656 kb on - strand, within GFF772 at 824.827 kb on + strand, within GFF772 at 824.828 kb on - strand, within GFF772 at 824.886 kb on + strand, within GFF772 at 824.887 kb on - strand, within GFF772 at 824.887 kb on - strand, within GFF772 at 825.054 kb on + strand, within GFF772 at 825.054 kb on + strand, within GFF772 at 825.054 kb on + strand, within GFF772 at 825.055 kb on - strand, within GFF772 at 825.055 kb on - strand, within GFF772 at 825.055 kb on - strand, within GFF772 at 825.055 kb on - strand, within GFF772 at 825.183 kb on + strand, within GFF772 at 825.359 kb on + strand at 825.570 kb on + strand at 825.571 kb on - strand at 825.571 kb on - strand at 825.631 kb on - strand, within GFF773 at 825.735 kb on + strand, within GFF773 at 825.736 kb on - strand, within GFF773 at 825.737 kb on + strand, within GFF773 at 825.737 kb on + strand, within GFF773 at 826.333 kb on + strand at 826.425 kb on - strand at 826.447 kb on + strand at 826.486 kb on + strand at 826.487 kb on - strand at 826.608 kb on - strand, within GFF774 at 826.608 kb on - strand, within GFF774 at 826.972 kb on - strand, within GFF774 at 827.225 kb on + strand, within GFF774 at 827.225 kb on + strand, within GFF774 at 827.232 kb on + strand, within GFF774 at 827.232 kb on + strand, within GFF774 at 827.233 kb on - strand, within GFF774 at 827.251 kb on + strand, within GFF774 at 827.251 kb on + strand, within GFF774 at 827.251 kb on + strand, within GFF774 at 827.251 kb on + strand, within GFF774 at 827.252 kb on - strand, within GFF774 at 827.252 kb on - strand, within GFF774 at 827.252 kb on - strand, within GFF774 at 827.253 kb on + strand, within GFF774 at 827.253 kb on + strand, within GFF774 at 827.253 kb on + strand, within GFF774 at 827.254 kb on - strand, within GFF774 at 827.254 kb on - strand, within GFF774 at 827.254 kb on - strand, within GFF774 at 827.254 kb on - strand, within GFF774 at 827.254 kb on - strand, within GFF774 at 827.359 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 824,599 - GFF772 0.30 -0.5 824,599 - GFF772 0.30 +0.3 824,628 + GFF772 0.33 -0.2 824,629 - GFF772 0.33 -0.4 824,655 + GFF772 0.35 -0.3 824,655 + GFF772 0.35 -1.2 824,656 - GFF772 0.35 -1.0 824,656 - GFF772 0.35 +0.3 824,656 - GFF772 0.35 +0.0 824,656 - GFF772 0.35 -0.2 824,827 + GFF772 0.51 +0.1 824,828 - GFF772 0.51 -0.0 824,886 + GFF772 0.56 -1.2 824,887 - GFF772 0.56 -0.2 824,887 - GFF772 0.56 -0.4 825,054 + GFF772 0.71 -0.1 825,054 + GFF772 0.71 -1.1 825,054 + GFF772 0.71 -0.1 825,055 - GFF772 0.71 -0.5 825,055 - GFF772 0.71 -0.4 825,055 - GFF772 0.71 -1.2 825,055 - GFF772 0.71 -0.6 825,183 + GFF772 0.83 -0.5 825,359 + +0.1 825,570 + -0.4 825,571 - -0.2 825,571 - -0.4 825,631 - GFF773 0.10 +1.9 825,735 + GFF773 0.23 +0.8 825,736 - GFF773 0.23 +0.5 825,737 + GFF773 0.23 +1.7 825,737 + GFF773 0.23 +0.2 826,333 + +0.3 826,425 - +0.6 826,447 + +1.0 826,486 + -0.7 826,487 - -0.1 826,608 - GFF774 0.21 +0.2 826,608 - GFF774 0.21 -1.6 826,972 - GFF774 0.55 -0.1 827,225 + GFF774 0.79 -1.4 827,225 + GFF774 0.79 -0.1 827,232 + GFF774 0.79 -0.0 827,232 + GFF774 0.79 -0.7 827,233 - GFF774 0.79 -0.3 827,251 + GFF774 0.81 +0.5 827,251 + GFF774 0.81 -0.4 827,251 + GFF774 0.81 +0.5 827,251 + GFF774 0.81 +0.3 827,252 - GFF774 0.81 +0.2 827,252 - GFF774 0.81 +0.7 827,252 - GFF774 0.81 -0.2 827,253 + GFF774 0.81 -1.0 827,253 + GFF774 0.81 +0.2 827,253 + GFF774 0.81 -0.0 827,254 - GFF774 0.81 -0.6 827,254 - GFF774 0.81 +0.5 827,254 - GFF774 0.81 +0.3 827,254 - GFF774 0.81 -1.2 827,254 - GFF774 0.81 -1.3 827,359 + -0.7
Or see this region's nucleotide sequence