Strain Fitness in Xanthobacter sp. DMC5 around GFF77

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF76 and GFF77 are separated by 156 nucleotidesGFF77 and GFF78 are separated by 5 nucleotidesGFF78 and GFF79 are separated by 10 nucleotides GFF76 - Holliday junction ATP-dependent DNA helicase RuvB, at 85,039 to 86,070 GFF76 GFF77 - hypothetical protein, at 86,227 to 86,769 GFF77 GFF78 - Holliday junction ATP-dependent DNA helicase RuvA, at 86,775 to 87,395 GFF78 GFF79 - hypothetical protein, at 87,406 to 87,837 GFF79 Position (kb) 86 87Strain fitness (log2 ratio) -1 0 1at 86.115 kb on + strandat 86.172 kb on - strandat 86.172 kb on - strandat 86.202 kb on - strandat 86.267 kb on - strandat 86.267 kb on - strandat 86.268 kb on + strandat 86.269 kb on - strandat 87.320 kb on - strand, within GFF78at 87.468 kb on + strand, within GFF79at 87.468 kb on + strand, within GFF79at 87.468 kb on + strand, within GFF79at 87.469 kb on - strand, within GFF79

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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86,115 + +0.9
86,172 - -1.3
86,172 - -0.3
86,202 - +0.2
86,267 - +0.3
86,267 - -0.5
86,268 + -1.1
86,269 - -0.0
87,320 - GFF78 0.88 +0.4
87,468 + GFF79 0.14 -0.3
87,468 + GFF79 0.14 -0.3
87,468 + GFF79 0.14 +0.0
87,469 - GFF79 0.15 +0.9

Or see this region's nucleotide sequence