Strain Fitness in Xanthobacter sp. DMC5 around GFF767

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF765 and GFF766 are separated by 4 nucleotidesGFF766 and GFF767 are separated by 217 nucleotidesGFF767 and GFF768 are separated by 42 nucleotides GFF765 - Thiosulfate sulfurtransferase GlpE, at 817,196 to 818,818 GFF765 GFF766 - 3-mercaptopropionate dioxygenase, at 818,823 to 819,461 GFF766 GFF767 - Putative aliphatic sulfonates-binding protein, at 819,679 to 820,683 GFF767 GFF768 - Nitrilotriacetate monooxygenase component A, at 820,726 to 822,057 GFF768 Position (kb) 819 820 821Strain fitness (log2 ratio) -1 0 1at 818.811 kb on + strandat 818.811 kb on + strandat 818.811 kb on + strandat 818.882 kb on + strandat 818.882 kb on + strandat 818.882 kb on + strandat 818.883 kb on - strandat 818.923 kb on + strand, within GFF766at 818.924 kb on - strand, within GFF766at 818.924 kb on - strand, within GFF766at 818.960 kb on - strand, within GFF766at 819.256 kb on + strand, within GFF766at 819.257 kb on - strand, within GFF766at 819.257 kb on - strand, within GFF766at 819.259 kb on + strand, within GFF766at 819.260 kb on - strand, within GFF766at 819.260 kb on - strand, within GFF766at 819.260 kb on - strand, within GFF766at 819.280 kb on + strand, within GFF766at 820.037 kb on - strand, within GFF767at 820.037 kb on - strand, within GFF767at 820.037 kb on - strand, within GFF767at 820.037 kb on - strand, within GFF767at 820.037 kb on - strand, within GFF767at 820.037 kb on - strand, within GFF767at 820.126 kb on - strand, within GFF767at 820.126 kb on - strand, within GFF767at 820.126 kb on - strand, within GFF767at 820.162 kb on + strand, within GFF767at 820.222 kb on + strand, within GFF767at 820.222 kb on + strand, within GFF767at 820.360 kb on + strand, within GFF767at 820.360 kb on + strand, within GFF767at 820.361 kb on - strand, within GFF767at 820.361 kb on - strand, within GFF767at 820.369 kb on + strand, within GFF767at 820.369 kb on + strand, within GFF767at 820.369 kb on + strand, within GFF767at 820.370 kb on - strand, within GFF767at 820.373 kb on - strand, within GFF767at 820.549 kb on + strand, within GFF767at 820.549 kb on + strand, within GFF767at 820.549 kb on + strand, within GFF767at 820.549 kb on + strand, within GFF767at 820.549 kb on + strand, within GFF767at 820.549 kb on + strand, within GFF767at 820.549 kb on + strand, within GFF767at 820.550 kb on - strand, within GFF767at 820.782 kb on + strandat 820.782 kb on + strandat 820.783 kb on - strandat 820.783 kb on - strandat 820.947 kb on + strand, within GFF768at 820.947 kb on + strand, within GFF768at 821.023 kb on - strand, within GFF768at 821.085 kb on + strand, within GFF768at 821.085 kb on + strand, within GFF768at 821.085 kb on + strand, within GFF768at 821.085 kb on + strand, within GFF768at 821.086 kb on - strand, within GFF768at 821.086 kb on - strand, within GFF768at 821.086 kb on - strand, within GFF768at 821.086 kb on - strand, within GFF768at 821.086 kb on - strand, within GFF768at 821.127 kb on + strand, within GFF768at 821.206 kb on + strand, within GFF768at 821.206 kb on + strand, within GFF768at 821.206 kb on + strand, within GFF768at 821.207 kb on - strand, within GFF768at 821.279 kb on - strand, within GFF768at 821.279 kb on - strand, within GFF768at 821.483 kb on - strand, within GFF768

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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818,811 + -1.2
818,811 + -0.8
818,811 + -0.2
818,882 + -0.0
818,882 + +0.6
818,882 + +0.2
818,883 - +1.0
818,923 + GFF766 0.16 +0.6
818,924 - GFF766 0.16 -0.7
818,924 - GFF766 0.16 +1.0
818,960 - GFF766 0.21 -0.2
819,256 + GFF766 0.68 -0.4
819,257 - GFF766 0.68 -0.8
819,257 - GFF766 0.68 -0.1
819,259 + GFF766 0.68 +0.9
819,260 - GFF766 0.68 -0.0
819,260 - GFF766 0.68 -0.2
819,260 - GFF766 0.68 +0.4
819,280 + GFF766 0.72 -0.8
820,037 - GFF767 0.36 +0.3
820,037 - GFF767 0.36 +0.5
820,037 - GFF767 0.36 +1.5
820,037 - GFF767 0.36 +0.1
820,037 - GFF767 0.36 -0.3
820,037 - GFF767 0.36 +0.5
820,126 - GFF767 0.44 +0.5
820,126 - GFF767 0.44 +0.3
820,126 - GFF767 0.44 -1.7
820,162 + GFF767 0.48 +1.2
820,222 + GFF767 0.54 -0.7
820,222 + GFF767 0.54 +0.5
820,360 + GFF767 0.68 +0.3
820,360 + GFF767 0.68 -1.1
820,361 - GFF767 0.68 -1.1
820,361 - GFF767 0.68 -0.9
820,369 + GFF767 0.69 -1.6
820,369 + GFF767 0.69 +0.6
820,369 + GFF767 0.69 +0.2
820,370 - GFF767 0.69 +0.3
820,373 - GFF767 0.69 +0.8
820,549 + GFF767 0.87 -0.2
820,549 + GFF767 0.87 -0.2
820,549 + GFF767 0.87 -0.9
820,549 + GFF767 0.87 +0.3
820,549 + GFF767 0.87 -0.0
820,549 + GFF767 0.87 +1.1
820,549 + GFF767 0.87 +1.3
820,550 - GFF767 0.87 +0.7
820,782 + -0.8
820,782 + +0.8
820,783 - +0.2
820,783 - -0.1
820,947 + GFF768 0.17 +0.0
820,947 + GFF768 0.17 -0.0
821,023 - GFF768 0.22 -1.0
821,085 + GFF768 0.27 -0.1
821,085 + GFF768 0.27 -0.4
821,085 + GFF768 0.27 +0.5
821,085 + GFF768 0.27 -0.4
821,086 - GFF768 0.27 -0.7
821,086 - GFF768 0.27 -0.3
821,086 - GFF768 0.27 -0.2
821,086 - GFF768 0.27 +1.3
821,086 - GFF768 0.27 -0.2
821,127 + GFF768 0.30 +0.9
821,206 + GFF768 0.36 -0.2
821,206 + GFF768 0.36 +0.0
821,206 + GFF768 0.36 -0.2
821,207 - GFF768 0.36 +0.3
821,279 - GFF768 0.42 -0.4
821,279 - GFF768 0.42 -0.1
821,483 - GFF768 0.57 +0.1

Or see this region's nucleotide sequence