Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF755 and GFF756 are separated by 9 nucleotides GFF756 and GFF757 are separated by 134 nucleotides GFF757 and GFF758 are separated by 146 nucleotides GFF758 and GFF759 are separated by 13 nucleotides
GFF755 - hypothetical protein, at 807,848 to 808,501
GFF755
GFF756 - hypothetical protein, at 808,511 to 809,347
GFF756
GFF757 - tRNA-dihydrouridine(20/20a) synthase, at 809,482 to 810,474
GFF757
GFF758 - hypothetical protein, at 810,621 to 811,145
GFF758
GFF759 - hypothetical protein, at 811,159 to 812,058
GFF759
Position (kb) 809
810
811 Strain fitness (log2 ratio) -2
-1
0
1 at 808.620 kb on + strand, within GFF756 at 808.677 kb on + strand, within GFF756 at 808.677 kb on + strand, within GFF756 at 808.731 kb on + strand, within GFF756 at 808.809 kb on + strand, within GFF756 at 808.809 kb on + strand, within GFF756 at 808.810 kb on - strand, within GFF756 at 808.822 kb on + strand, within GFF756 at 808.823 kb on - strand, within GFF756 at 808.823 kb on - strand, within GFF756 at 808.823 kb on - strand, within GFF756 at 808.888 kb on - strand, within GFF756 at 808.888 kb on - strand, within GFF756 at 809.218 kb on - strand, within GFF756 at 809.406 kb on + strand at 809.406 kb on + strand at 809.406 kb on + strand at 809.406 kb on + strand at 809.407 kb on - strand at 809.407 kb on - strand at 809.450 kb on - strand at 809.676 kb on + strand, within GFF757 at 809.677 kb on - strand, within GFF757 at 809.677 kb on - strand, within GFF757 at 809.678 kb on + strand, within GFF757 at 809.679 kb on - strand, within GFF757 at 809.679 kb on - strand, within GFF757 at 809.710 kb on - strand, within GFF757 at 809.710 kb on - strand, within GFF757 at 809.777 kb on + strand, within GFF757 at 809.909 kb on + strand, within GFF757 at 809.909 kb on + strand, within GFF757 at 809.909 kb on + strand, within GFF757 at 809.910 kb on - strand, within GFF757 at 810.199 kb on + strand, within GFF757 at 810.199 kb on + strand, within GFF757 at 810.524 kb on - strand at 810.544 kb on + strand at 810.545 kb on - strand at 810.788 kb on - strand, within GFF758 at 810.788 kb on - strand, within GFF758 at 810.835 kb on + strand, within GFF758 at 810.836 kb on - strand, within GFF758 at 810.836 kb on - strand, within GFF758 at 810.836 kb on - strand, within GFF758 at 810.911 kb on - strand, within GFF758 at 811.069 kb on + strand, within GFF758 at 811.184 kb on + strand at 811.212 kb on - strand at 811.360 kb on - strand, within GFF759 at 811.407 kb on + strand, within GFF759 at 811.438 kb on - strand, within GFF759 at 811.439 kb on + strand, within GFF759 at 811.440 kb on - strand, within GFF759 at 811.440 kb on - strand, within GFF759 at 811.440 kb on - strand, within GFF759 at 811.446 kb on - strand, within GFF759 at 811.446 kb on - strand, within GFF759 at 811.448 kb on + strand, within GFF759 at 811.448 kb on + strand, within GFF759 at 811.449 kb on - strand, within GFF759 at 811.449 kb on - strand, within GFF759
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 808,620 + GFF756 0.13 +1.1 808,677 + GFF756 0.20 +0.3 808,677 + GFF756 0.20 -0.3 808,731 + GFF756 0.26 -0.2 808,809 + GFF756 0.36 +0.5 808,809 + GFF756 0.36 +0.3 808,810 - GFF756 0.36 +0.4 808,822 + GFF756 0.37 +1.5 808,823 - GFF756 0.37 +0.3 808,823 - GFF756 0.37 +0.7 808,823 - GFF756 0.37 -0.7 808,888 - GFF756 0.45 -1.5 808,888 - GFF756 0.45 -0.1 809,218 - GFF756 0.84 -0.2 809,406 + -1.7 809,406 + +0.6 809,406 + -0.3 809,406 + -1.6 809,407 - -0.2 809,407 - +0.9 809,450 - -1.2 809,676 + GFF757 0.20 +0.2 809,677 - GFF757 0.20 +0.1 809,677 - GFF757 0.20 +1.0 809,678 + GFF757 0.20 -1.7 809,679 - GFF757 0.20 +0.5 809,679 - GFF757 0.20 +1.6 809,710 - GFF757 0.23 -0.1 809,710 - GFF757 0.23 -0.3 809,777 + GFF757 0.30 -0.6 809,909 + GFF757 0.43 -0.0 809,909 + GFF757 0.43 +0.5 809,909 + GFF757 0.43 -0.3 809,910 - GFF757 0.43 -0.4 810,199 + GFF757 0.72 -0.5 810,199 + GFF757 0.72 +0.3 810,524 - +0.6 810,544 + -0.2 810,545 - +0.6 810,788 - GFF758 0.32 -1.3 810,788 - GFF758 0.32 -0.0 810,835 + GFF758 0.41 -0.4 810,836 - GFF758 0.41 +0.4 810,836 - GFF758 0.41 +0.5 810,836 - GFF758 0.41 +0.1 810,911 - GFF758 0.55 +0.8 811,069 + GFF758 0.85 -0.5 811,184 + +0.8 811,212 - +0.4 811,360 - GFF759 0.22 -1.9 811,407 + GFF759 0.28 +1.5 811,438 - GFF759 0.31 -0.8 811,439 + GFF759 0.31 -0.9 811,440 - GFF759 0.31 -1.9 811,440 - GFF759 0.31 -1.9 811,440 - GFF759 0.31 -0.4 811,446 - GFF759 0.32 +0.4 811,446 - GFF759 0.32 -1.0 811,448 + GFF759 0.32 +0.3 811,448 + GFF759 0.32 +1.0 811,449 - GFF759 0.32 -1.7 811,449 - GFF759 0.32 +0.1
Or see this region's nucleotide sequence