Strain Fitness in Xanthobacter sp. DMC5 around GFF751

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF750 and GFF751 are separated by 331 nucleotidesGFF751 and GFF752 are separated by 38 nucleotidesGFF752 and GFF753 are separated by 56 nucleotides GFF750 - Single-stranded DNA-binding protein, at 800,409 to 800,969 GFF750 GFF751 - DNA gyrase subunit A, at 801,301 to 804,060 GFF751 GFF752 - Homoserine/homoserine lactone efflux protein, at 804,099 to 804,710 GFF752 GFF753 - ATP-dependent DNA helicase RecQ, at 804,767 to 806,584 GFF753 Position (kb) 801 802 803 804 805Strain fitness (log2 ratio) -2 -1 0 1at 804.288 kb on + strand, within GFF752at 804.289 kb on - strand, within GFF752at 804.289 kb on - strand, within GFF752at 804.289 kb on - strand, within GFF752at 804.289 kb on - strand, within GFF752at 804.331 kb on - strand, within GFF752at 804.345 kb on + strand, within GFF752at 804.346 kb on - strand, within GFF752at 804.757 kb on - strandat 804.757 kb on - strandat 804.927 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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804,288 + GFF752 0.31 -1.9
804,289 - GFF752 0.31 +0.4
804,289 - GFF752 0.31 -1.5
804,289 - GFF752 0.31 -0.7
804,289 - GFF752 0.31 -0.7
804,331 - GFF752 0.38 -0.2
804,345 + GFF752 0.40 -1.1
804,346 - GFF752 0.40 -1.5
804,757 - +1.0
804,757 - +0.3
804,927 - +0.1

Or see this region's nucleotide sequence