Strain Fitness in Xanthobacter sp. DMC5 around GFF750

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF749 and GFF750 are separated by 451 nucleotidesGFF750 and GFF751 are separated by 331 nucleotides GFF749 - UvrABC system protein A, at 796,820 to 799,957 GFF749 GFF750 - Single-stranded DNA-binding protein, at 800,409 to 800,969 GFF750 GFF751 - DNA gyrase subunit A, at 801,301 to 804,060 GFF751 Position (kb) 800 801Strain fitness (log2 ratio) -1 0 1 2at 799.441 kb on - strand, within GFF749at 799.566 kb on + strand, within GFF749at 799.566 kb on + strand, within GFF749at 799.567 kb on - strand, within GFF749at 799.567 kb on - strand, within GFF749at 799.636 kb on - strand, within GFF749at 799.729 kb on - strandat 799.729 kb on - strandat 799.749 kb on + strandat 800.240 kb on - strandat 800.246 kb on + strandat 800.246 kb on + strandat 800.246 kb on + strandat 800.246 kb on + strandat 800.247 kb on - strandat 800.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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799,441 - GFF749 0.84 -1.1
799,566 + GFF749 0.88 +0.3
799,566 + GFF749 0.88 +0.2
799,567 - GFF749 0.88 -0.1
799,567 - GFF749 0.88 +0.2
799,636 - GFF749 0.90 -0.3
799,729 - -1.3
799,729 - +2.3
799,749 + -0.3
800,240 - -0.5
800,246 + +0.8
800,246 + +0.7
800,246 + -0.7
800,246 + +0.5
800,247 - +0.8
800,255 - -0.6

Or see this region's nucleotide sequence