Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF748 and GFF749 are separated by 30 nucleotides GFF749 and GFF750 are separated by 451 nucleotides
GFF748 - hypothetical protein, at 796,175 to 796,789
GFF748
GFF749 - UvrABC system protein A, at 796,820 to 799,957
GFF749
GFF750 - Single-stranded DNA-binding protein, at 800,409 to 800,969
GFF750
Position (kb) 796
797
798
799
800 Strain fitness (log2 ratio) -2
-1
0
1
2 at 796.046 kb on + strand at 796.047 kb on - strand at 796.047 kb on - strand at 796.053 kb on - strand at 796.053 kb on - strand at 796.115 kb on + strand at 796.116 kb on - strand at 796.191 kb on - strand at 796.631 kb on + strand, within GFF748 at 796.658 kb on - strand, within GFF748 at 796.731 kb on - strand at 797.313 kb on + strand, within GFF749 at 797.313 kb on + strand, within GFF749 at 797.314 kb on - strand, within GFF749 at 797.314 kb on - strand, within GFF749 at 797.314 kb on - strand, within GFF749 at 797.415 kb on + strand, within GFF749 at 797.539 kb on + strand, within GFF749 at 797.595 kb on + strand, within GFF749 at 797.595 kb on + strand, within GFF749 at 797.595 kb on + strand, within GFF749 at 797.596 kb on - strand, within GFF749 at 797.596 kb on - strand, within GFF749 at 797.596 kb on - strand, within GFF749 at 797.762 kb on - strand, within GFF749 at 797.763 kb on + strand, within GFF749 at 797.764 kb on - strand, within GFF749 at 797.907 kb on + strand, within GFF749 at 797.908 kb on - strand, within GFF749 at 797.908 kb on - strand, within GFF749 at 797.908 kb on - strand, within GFF749 at 798.096 kb on + strand, within GFF749 at 798.236 kb on + strand, within GFF749 at 798.237 kb on - strand, within GFF749 at 798.339 kb on + strand, within GFF749 at 798.339 kb on + strand, within GFF749 at 798.439 kb on - strand, within GFF749 at 798.675 kb on + strand, within GFF749 at 798.676 kb on - strand, within GFF749 at 798.771 kb on + strand, within GFF749 at 798.771 kb on + strand, within GFF749 at 798.771 kb on + strand, within GFF749 at 798.772 kb on - strand, within GFF749 at 798.889 kb on - strand, within GFF749 at 798.922 kb on - strand, within GFF749 at 798.922 kb on - strand, within GFF749 at 798.924 kb on + strand, within GFF749 at 798.924 kb on + strand, within GFF749 at 798.925 kb on - strand, within GFF749 at 799.441 kb on - strand, within GFF749 at 799.566 kb on + strand, within GFF749 at 799.566 kb on + strand, within GFF749 at 799.567 kb on - strand, within GFF749 at 799.567 kb on - strand, within GFF749 at 799.636 kb on - strand, within GFF749 at 799.729 kb on - strand at 799.729 kb on - strand at 799.749 kb on + strand at 800.240 kb on - strand at 800.246 kb on + strand at 800.246 kb on + strand at 800.246 kb on + strand at 800.246 kb on + strand at 800.247 kb on - strand at 800.255 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 796,046 + +0.0 796,047 - -2.0 796,047 - -1.0 796,053 - -0.3 796,053 - -0.7 796,115 + -2.3 796,116 - -0.2 796,191 - -0.8 796,631 + GFF748 0.74 -0.1 796,658 - GFF748 0.79 -0.4 796,731 - -0.1 797,313 + GFF749 0.16 +0.2 797,313 + GFF749 0.16 -0.7 797,314 - GFF749 0.16 -0.5 797,314 - GFF749 0.16 -0.7 797,314 - GFF749 0.16 +0.6 797,415 + GFF749 0.19 +0.2 797,539 + GFF749 0.23 +0.7 797,595 + GFF749 0.25 -0.0 797,595 + GFF749 0.25 +1.3 797,595 + GFF749 0.25 +1.3 797,596 - GFF749 0.25 +1.7 797,596 - GFF749 0.25 +0.1 797,596 - GFF749 0.25 -0.0 797,762 - GFF749 0.30 -0.6 797,763 + GFF749 0.30 -0.0 797,764 - GFF749 0.30 -0.0 797,907 + GFF749 0.35 +0.2 797,908 - GFF749 0.35 -1.2 797,908 - GFF749 0.35 -0.8 797,908 - GFF749 0.35 -0.7 798,096 + GFF749 0.41 -0.4 798,236 + GFF749 0.45 -0.3 798,237 - GFF749 0.45 -0.1 798,339 + GFF749 0.48 -1.1 798,339 + GFF749 0.48 -1.5 798,439 - GFF749 0.52 +0.1 798,675 + GFF749 0.59 +0.3 798,676 - GFF749 0.59 +0.2 798,771 + GFF749 0.62 +1.0 798,771 + GFF749 0.62 -0.8 798,771 + GFF749 0.62 +0.9 798,772 - GFF749 0.62 -1.2 798,889 - GFF749 0.66 +0.1 798,922 - GFF749 0.67 +0.2 798,922 - GFF749 0.67 +0.9 798,924 + GFF749 0.67 -0.2 798,924 + GFF749 0.67 -0.6 798,925 - GFF749 0.67 -0.9 799,441 - GFF749 0.84 -1.1 799,566 + GFF749 0.88 +0.3 799,566 + GFF749 0.88 +0.2 799,567 - GFF749 0.88 -0.1 799,567 - GFF749 0.88 +0.2 799,636 - GFF749 0.90 -0.3 799,729 - -1.3 799,729 - +2.3 799,749 + -0.3 800,240 - -0.5 800,246 + +0.8 800,246 + +0.7 800,246 + -0.7 800,246 + +0.5 800,247 - +0.8 800,255 - -0.6
Or see this region's nucleotide sequence