Strain Fitness in Xanthobacter sp. DMC5 around GFF747

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF746 and GFF747 are separated by 195 nucleotidesGFF747 and GFF748 are separated by 418 nucleotides GFF746 - Methylenetetrahydrofolate--tRNA-(uracil-5-)-methy ltransferase TrmFO, at 793,954 to 795,399 GFF746 GFF747 - hypothetical protein, at 795,595 to 795,756 GFF747 GFF748 - hypothetical protein, at 796,175 to 796,789 GFF748 Position (kb) 795 796Strain fitness (log2 ratio) -2 -1 0 1at 794.741 kb on + strand, within GFF746at 794.742 kb on - strand, within GFF746at 794.742 kb on - strand, within GFF746at 794.807 kb on + strand, within GFF746at 794.838 kb on - strand, within GFF746at 794.868 kb on + strand, within GFF746at 795.759 kb on + strandat 795.760 kb on - strandat 795.760 kb on - strandat 795.760 kb on - strandat 795.813 kb on + strandat 795.813 kb on + strandat 795.814 kb on - strandat 795.814 kb on - strandat 795.814 kb on - strandat 796.046 kb on + strandat 796.047 kb on - strandat 796.047 kb on - strandat 796.053 kb on - strandat 796.053 kb on - strandat 796.115 kb on + strandat 796.116 kb on - strandat 796.191 kb on - strandat 796.631 kb on + strand, within GFF748at 796.658 kb on - strand, within GFF748at 796.731 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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794,741 + GFF746 0.54 -0.7
794,742 - GFF746 0.54 +0.1
794,742 - GFF746 0.54 -1.0
794,807 + GFF746 0.59 -0.5
794,838 - GFF746 0.61 +0.1
794,868 + GFF746 0.63 +0.1
795,759 + -0.5
795,760 - +0.4
795,760 - +0.9
795,760 - -0.6
795,813 + +0.3
795,813 + -0.6
795,814 - +0.8
795,814 - -0.9
795,814 - -0.5
796,046 + +0.0
796,047 - -2.0
796,047 - -1.0
796,053 - -0.3
796,053 - -0.7
796,115 + -2.3
796,116 - -0.2
796,191 - -0.8
796,631 + GFF748 0.74 -0.1
796,658 - GFF748 0.79 -0.4
796,731 - -0.1

Or see this region's nucleotide sequence