Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF739 and GFF740 are separated by 9 nucleotides GFF740 and GFF741 are separated by 12 nucleotides GFF741 and GFF742 are separated by 323 nucleotides
GFF739 - Carbon monoxide dehydrogenase large chain, at 785,345 to 787,723
GFF739
GFF740 - Carbon monoxide dehydrogenase medium chain, at 787,733 to 788,533
GFF740
GFF741 - putative cyclic di-GMP phosphodiesterase PdeB, at 788,546 to 790,021
GFF741
GFF742 - hypothetical protein, at 790,345 to 790,953
GFF742
Position (kb) 788
789
790
791 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 787.736 kb on + strand at 787.736 kb on + strand at 787.736 kb on + strand at 787.736 kb on + strand at 787.736 kb on + strand at 787.737 kb on - strand at 787.737 kb on - strand at 788.096 kb on + strand, within GFF740 at 788.165 kb on + strand, within GFF740 at 788.166 kb on - strand, within GFF740 at 788.250 kb on - strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.604 kb on + strand at 788.647 kb on - strand at 788.647 kb on - strand at 788.719 kb on + strand, within GFF741 at 788.719 kb on + strand, within GFF741 at 788.719 kb on + strand, within GFF741 at 788.719 kb on + strand, within GFF741 at 788.720 kb on - strand, within GFF741 at 788.720 kb on - strand, within GFF741 at 788.720 kb on - strand, within GFF741 at 788.721 kb on + strand, within GFF741 at 788.721 kb on + strand, within GFF741 at 788.722 kb on - strand, within GFF741 at 788.752 kb on + strand, within GFF741 at 788.814 kb on + strand, within GFF741 at 788.814 kb on + strand, within GFF741 at 788.815 kb on - strand, within GFF741 at 788.815 kb on - strand, within GFF741 at 788.830 kb on - strand, within GFF741 at 788.942 kb on + strand, within GFF741 at 788.943 kb on - strand, within GFF741 at 788.943 kb on - strand, within GFF741 at 788.943 kb on - strand, within GFF741 at 789.155 kb on - strand, within GFF741 at 789.249 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.519 kb on + strand, within GFF741 at 789.520 kb on - strand, within GFF741 at 789.787 kb on - strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.841 kb on + strand, within GFF741 at 789.909 kb on + strand at 789.945 kb on + strand at 789.946 kb on - strand at 789.996 kb on + strand at 789.996 kb on + strand at 789.996 kb on + strand at 789.997 kb on - strand at 789.997 kb on - strand at 789.997 kb on - strand at 790.156 kb on - strand at 790.164 kb on + strand at 790.341 kb on + strand at 790.341 kb on + strand at 790.341 kb on + strand at 790.342 kb on - strand at 790.404 kb on + strand at 790.525 kb on + strand, within GFF742 at 790.525 kb on + strand, within GFF742 at 790.525 kb on + strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.526 kb on - strand, within GFF742 at 790.628 kb on + strand, within GFF742 at 790.628 kb on + strand, within GFF742 at 790.628 kb on + strand, within GFF742 at 790.629 kb on - strand, within GFF742 at 790.629 kb on - strand, within GFF742 at 790.681 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.882 kb on + strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.883 kb on - strand, within GFF742 at 790.888 kb on + strand, within GFF742 at 790.889 kb on - strand, within GFF742 at 790.889 kb on - strand, within GFF742
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 787,736 + -0.5 787,736 + +0.5 787,736 + +0.6 787,736 + +0.1 787,736 + -1.0 787,737 - +0.5 787,737 - +1.3 788,096 + GFF740 0.45 +0.7 788,165 + GFF740 0.54 -0.0 788,166 - GFF740 0.54 -0.2 788,250 - GFF740 0.65 +0.7 788,279 + GFF740 0.68 +0.8 788,279 + GFF740 0.68 -0.6 788,279 + GFF740 0.68 +0.2 788,279 + GFF740 0.68 +0.5 788,279 + GFF740 0.68 -1.0 788,604 + +0.3 788,647 - -0.9 788,647 - -0.7 788,719 + GFF741 0.12 +1.0 788,719 + GFF741 0.12 -0.3 788,719 + GFF741 0.12 -0.3 788,719 + GFF741 0.12 -2.9 788,720 - GFF741 0.12 -0.9 788,720 - GFF741 0.12 -0.3 788,720 - GFF741 0.12 -1.3 788,721 + GFF741 0.12 -1.0 788,721 + GFF741 0.12 +0.4 788,722 - GFF741 0.12 +1.2 788,752 + GFF741 0.14 +0.0 788,814 + GFF741 0.18 -2.0 788,814 + GFF741 0.18 -1.8 788,815 - GFF741 0.18 +1.5 788,815 - GFF741 0.18 -0.9 788,830 - GFF741 0.19 +0.2 788,942 + GFF741 0.27 +0.4 788,943 - GFF741 0.27 -0.8 788,943 - GFF741 0.27 -0.2 788,943 - GFF741 0.27 +0.7 789,155 - GFF741 0.41 +0.6 789,249 + GFF741 0.48 -0.7 789,519 + GFF741 0.66 -1.0 789,519 + GFF741 0.66 -1.3 789,519 + GFF741 0.66 -0.3 789,519 + GFF741 0.66 -0.2 789,519 + GFF741 0.66 +0.3 789,519 + GFF741 0.66 +0.2 789,520 - GFF741 0.66 -0.5 789,787 - GFF741 0.84 +0.8 789,841 + GFF741 0.88 +0.3 789,841 + GFF741 0.88 +0.1 789,841 + GFF741 0.88 -0.9 789,841 + GFF741 0.88 +0.5 789,909 + +0.4 789,945 + -0.7 789,946 - -0.3 789,996 + +0.3 789,996 + +0.1 789,996 + +0.4 789,997 - -0.7 789,997 - -0.7 789,997 - +1.2 790,156 - -0.5 790,164 + -1.3 790,341 + -0.0 790,341 + -1.0 790,341 + +0.0 790,342 - +0.6 790,404 + -0.3 790,525 + GFF742 0.30 +1.2 790,525 + GFF742 0.30 +0.5 790,525 + GFF742 0.30 +1.7 790,526 - GFF742 0.30 +0.3 790,526 - GFF742 0.30 +1.6 790,526 - GFF742 0.30 -1.3 790,526 - GFF742 0.30 +0.6 790,526 - GFF742 0.30 -0.0 790,628 + GFF742 0.46 +0.4 790,628 + GFF742 0.46 -0.1 790,628 + GFF742 0.46 -0.0 790,629 - GFF742 0.47 -0.8 790,629 - GFF742 0.47 -0.6 790,681 + GFF742 0.55 +1.9 790,882 + GFF742 0.88 -0.6 790,882 + GFF742 0.88 +1.0 790,882 + GFF742 0.88 -0.0 790,882 + GFF742 0.88 +0.5 790,882 + GFF742 0.88 -0.2 790,882 + GFF742 0.88 -1.3 790,883 - GFF742 0.88 -0.6 790,883 - GFF742 0.88 -1.4 790,883 - GFF742 0.88 -0.1 790,883 - GFF742 0.88 -0.3 790,883 - GFF742 0.88 +2.2 790,883 - GFF742 0.88 +0.7 790,883 - GFF742 0.88 +0.1 790,883 - GFF742 0.88 -0.4 790,888 + GFF742 0.89 +0.5 790,889 - GFF742 0.89 -1.0 790,889 - GFF742 0.89 +0.1
Or see this region's nucleotide sequence