Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF737 and GFF738 are separated by 161 nucleotides GFF738 and GFF739 are separated by 76 nucleotides GFF739 and GFF740 are separated by 9 nucleotides GFF740 and GFF741 are separated by 12 nucleotides
GFF737 - hypothetical protein, at 783,464 to 784,588
GFF737
GFF738 - Carbon monoxide dehydrogenase small chain, at 784,750 to 785,268
GFF738
GFF739 - Carbon monoxide dehydrogenase large chain, at 785,345 to 787,723
GFF739
GFF740 - Carbon monoxide dehydrogenase medium chain, at 787,733 to 788,533
GFF740
GFF741 - putative cyclic di-GMP phosphodiesterase PdeB, at 788,546 to 790,021
GFF741
Position (kb) 785
786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 784.430 kb on + strand, within GFF737 at 784.431 kb on - strand, within GFF737 at 785.172 kb on + strand, within GFF738 at 785.173 kb on - strand, within GFF738 at 785.173 kb on - strand, within GFF738 at 785.173 kb on - strand, within GFF738 at 785.173 kb on - strand, within GFF738 at 785.173 kb on - strand, within GFF738 at 785.198 kb on - strand, within GFF738 at 785.267 kb on - strand at 785.308 kb on + strand at 785.308 kb on + strand at 785.309 kb on - strand at 785.309 kb on - strand at 785.468 kb on + strand at 785.468 kb on + strand at 785.468 kb on + strand at 785.469 kb on - strand at 785.474 kb on + strand at 785.475 kb on - strand at 785.475 kb on - strand at 785.475 kb on - strand at 785.493 kb on - strand at 785.688 kb on - strand, within GFF739 at 785.688 kb on - strand, within GFF739 at 785.769 kb on - strand, within GFF739 at 785.926 kb on + strand, within GFF739 at 785.984 kb on + strand, within GFF739 at 785.985 kb on - strand, within GFF739 at 786.143 kb on + strand, within GFF739 at 786.143 kb on + strand, within GFF739 at 786.335 kb on + strand, within GFF739 at 786.375 kb on - strand, within GFF739 at 786.375 kb on - strand, within GFF739 at 786.398 kb on + strand, within GFF739 at 786.416 kb on + strand, within GFF739 at 786.416 kb on + strand, within GFF739 at 786.417 kb on - strand, within GFF739 at 786.437 kb on + strand, within GFF739 at 786.438 kb on - strand, within GFF739 at 786.438 kb on - strand, within GFF739 at 786.438 kb on - strand, within GFF739 at 786.611 kb on + strand, within GFF739 at 786.665 kb on + strand, within GFF739 at 786.737 kb on + strand, within GFF739 at 786.737 kb on + strand, within GFF739 at 786.737 kb on + strand, within GFF739 at 786.738 kb on - strand, within GFF739 at 786.739 kb on + strand, within GFF739 at 786.739 kb on + strand, within GFF739 at 786.740 kb on - strand, within GFF739 at 786.989 kb on + strand, within GFF739 at 786.990 kb on - strand, within GFF739 at 786.990 kb on - strand, within GFF739 at 786.990 kb on - strand, within GFF739 at 787.181 kb on + strand, within GFF739 at 787.181 kb on + strand, within GFF739 at 787.182 kb on - strand, within GFF739 at 787.182 kb on - strand, within GFF739 at 787.182 kb on - strand, within GFF739 at 787.182 kb on - strand, within GFF739 at 787.182 kb on - strand, within GFF739 at 787.241 kb on + strand, within GFF739 at 787.242 kb on - strand, within GFF739 at 787.242 kb on - strand, within GFF739 at 787.442 kb on + strand, within GFF739 at 787.442 kb on + strand, within GFF739 at 787.442 kb on + strand, within GFF739 at 787.476 kb on - strand, within GFF739 at 787.476 kb on - strand, within GFF739 at 787.476 kb on - strand, within GFF739 at 787.476 kb on - strand, within GFF739 at 787.476 kb on - strand, within GFF739 at 787.476 kb on - strand, within GFF739 at 787.484 kb on + strand, within GFF739 at 787.485 kb on - strand, within GFF739 at 787.485 kb on - strand, within GFF739 at 787.736 kb on + strand at 787.736 kb on + strand at 787.736 kb on + strand at 787.736 kb on + strand at 787.736 kb on + strand at 787.737 kb on - strand at 787.737 kb on - strand at 788.096 kb on + strand, within GFF740 at 788.165 kb on + strand, within GFF740 at 788.166 kb on - strand, within GFF740 at 788.250 kb on - strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.279 kb on + strand, within GFF740 at 788.604 kb on + strand at 788.647 kb on - strand at 788.647 kb on - strand at 788.719 kb on + strand, within GFF741 at 788.719 kb on + strand, within GFF741 at 788.719 kb on + strand, within GFF741 at 788.719 kb on + strand, within GFF741 at 788.720 kb on - strand, within GFF741 at 788.720 kb on - strand, within GFF741 at 788.720 kb on - strand, within GFF741 at 788.721 kb on + strand, within GFF741 at 788.721 kb on + strand, within GFF741 at 788.722 kb on - strand, within GFF741
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 784,430 + GFF737 0.86 +0.9 784,431 - GFF737 0.86 -0.1 785,172 + GFF738 0.81 +0.2 785,173 - GFF738 0.82 -0.3 785,173 - GFF738 0.82 +0.1 785,173 - GFF738 0.82 -1.7 785,173 - GFF738 0.82 +0.7 785,173 - GFF738 0.82 -1.3 785,198 - GFF738 0.86 +0.1 785,267 - -1.6 785,308 + -0.4 785,308 + +0.4 785,309 - +0.3 785,309 - -0.5 785,468 + +0.7 785,468 + -1.0 785,468 + +0.3 785,469 - -1.4 785,474 + +1.1 785,475 - -0.8 785,475 - +0.0 785,475 - -1.7 785,493 - -1.5 785,688 - GFF739 0.14 +0.0 785,688 - GFF739 0.14 -1.2 785,769 - GFF739 0.18 +0.3 785,926 + GFF739 0.24 +1.5 785,984 + GFF739 0.27 -0.3 785,985 - GFF739 0.27 -0.0 786,143 + GFF739 0.34 -0.5 786,143 + GFF739 0.34 -0.2 786,335 + GFF739 0.42 -1.3 786,375 - GFF739 0.43 -0.0 786,375 - GFF739 0.43 -0.9 786,398 + GFF739 0.44 -1.0 786,416 + GFF739 0.45 +0.3 786,416 + GFF739 0.45 +0.8 786,417 - GFF739 0.45 +1.2 786,437 + GFF739 0.46 -1.0 786,438 - GFF739 0.46 +0.8 786,438 - GFF739 0.46 +0.9 786,438 - GFF739 0.46 -0.1 786,611 + GFF739 0.53 +0.7 786,665 + GFF739 0.55 -0.4 786,737 + GFF739 0.59 -2.6 786,737 + GFF739 0.59 -0.8 786,737 + GFF739 0.59 -0.7 786,738 - GFF739 0.59 -0.6 786,739 + GFF739 0.59 -0.1 786,739 + GFF739 0.59 +0.5 786,740 - GFF739 0.59 -1.2 786,989 + GFF739 0.69 +1.2 786,990 - GFF739 0.69 -0.1 786,990 - GFF739 0.69 +1.1 786,990 - GFF739 0.69 +0.9 787,181 + GFF739 0.77 -0.4 787,181 + GFF739 0.77 +0.1 787,182 - GFF739 0.77 -0.1 787,182 - GFF739 0.77 +1.3 787,182 - GFF739 0.77 -0.7 787,182 - GFF739 0.77 +0.2 787,182 - GFF739 0.77 -0.6 787,241 + GFF739 0.80 +0.5 787,242 - GFF739 0.80 +0.0 787,242 - GFF739 0.80 +0.1 787,442 + GFF739 0.88 -0.4 787,442 + GFF739 0.88 -0.4 787,442 + GFF739 0.88 +0.2 787,476 - GFF739 0.90 -0.7 787,476 - GFF739 0.90 -1.0 787,476 - GFF739 0.90 -0.0 787,476 - GFF739 0.90 +0.8 787,476 - GFF739 0.90 +0.3 787,476 - GFF739 0.90 +0.7 787,484 + GFF739 0.90 -1.3 787,485 - GFF739 0.90 +0.4 787,485 - GFF739 0.90 +1.3 787,736 + -0.5 787,736 + +0.5 787,736 + +0.6 787,736 + +0.1 787,736 + -1.0 787,737 - +0.5 787,737 - +1.3 788,096 + GFF740 0.45 +0.7 788,165 + GFF740 0.54 -0.0 788,166 - GFF740 0.54 -0.2 788,250 - GFF740 0.65 +0.7 788,279 + GFF740 0.68 +0.8 788,279 + GFF740 0.68 -0.6 788,279 + GFF740 0.68 +0.2 788,279 + GFF740 0.68 +0.5 788,279 + GFF740 0.68 -1.0 788,604 + +0.3 788,647 - -0.9 788,647 - -0.7 788,719 + GFF741 0.12 +1.0 788,719 + GFF741 0.12 -0.3 788,719 + GFF741 0.12 -0.3 788,719 + GFF741 0.12 -2.9 788,720 - GFF741 0.12 -0.9 788,720 - GFF741 0.12 -0.3 788,720 - GFF741 0.12 -1.3 788,721 + GFF741 0.12 -1.0 788,721 + GFF741 0.12 +0.4 788,722 - GFF741 0.12 +1.2
Or see this region's nucleotide sequence