Strain Fitness in Xanthobacter sp. DMC5 around GFF736

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF735 and GFF736 overlap by 1 nucleotidesGFF736 and GFF737 are separated by 303 nucleotides GFF735 - hypothetical protein, at 780,756 to 782,243 GFF735 GFF736 - High-affinity branched-chain amino acid transport system permease protein LivH, at 782,243 to 783,160 GFF736 GFF737 - hypothetical protein, at 783,464 to 784,588 GFF737 Position (kb) 782 783 784Strain fitness (log2 ratio) -2 -1 0 1at 781.436 kb on + strand, within GFF735at 781.436 kb on + strand, within GFF735at 781.437 kb on - strand, within GFF735at 781.437 kb on - strand, within GFF735at 781.504 kb on + strand, within GFF735at 781.504 kb on + strand, within GFF735at 781.677 kb on - strand, within GFF735at 781.693 kb on + strand, within GFF735at 781.694 kb on - strand, within GFF735at 781.694 kb on - strand, within GFF735at 781.706 kb on - strand, within GFF735at 781.764 kb on + strand, within GFF735at 781.765 kb on - strand, within GFF735at 781.768 kb on + strand, within GFF735at 781.768 kb on + strand, within GFF735at 781.769 kb on - strand, within GFF735at 781.769 kb on - strand, within GFF735at 781.780 kb on + strand, within GFF735at 781.781 kb on - strand, within GFF735at 782.036 kb on - strand, within GFF735at 782.039 kb on + strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.040 kb on - strand, within GFF735at 782.334 kb on + strandat 782.334 kb on + strandat 782.394 kb on - strand, within GFF736at 782.394 kb on - strand, within GFF736at 782.490 kb on + strand, within GFF736at 782.493 kb on + strand, within GFF736at 782.493 kb on + strand, within GFF736at 782.494 kb on - strand, within GFF736at 782.494 kb on - strand, within GFF736at 782.494 kb on - strand, within GFF736at 782.502 kb on + strand, within GFF736at 782.503 kb on - strand, within GFF736at 782.503 kb on - strand, within GFF736at 782.503 kb on - strand, within GFF736at 782.653 kb on - strand, within GFF736at 782.706 kb on + strand, within GFF736at 782.707 kb on - strand, within GFF736at 782.724 kb on + strand, within GFF736at 782.724 kb on + strand, within GFF736at 782.724 kb on + strand, within GFF736at 782.965 kb on + strand, within GFF736at 782.965 kb on + strand, within GFF736at 782.965 kb on + strand, within GFF736at 782.966 kb on - strand, within GFF736at 783.108 kb on + strandat 783.109 kb on - strandat 783.317 kb on + strandat 783.350 kb on + strandat 783.674 kb on + strand, within GFF737at 783.674 kb on + strand, within GFF737at 783.675 kb on - strand, within GFF737at 783.980 kb on + strand, within GFF737at 783.981 kb on - strand, within GFF737

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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781,436 + GFF735 0.46 -0.8
781,436 + GFF735 0.46 +0.8
781,437 - GFF735 0.46 +0.2
781,437 - GFF735 0.46 -1.4
781,504 + GFF735 0.50 -1.5
781,504 + GFF735 0.50 -0.7
781,677 - GFF735 0.62 -0.5
781,693 + GFF735 0.63 -0.0
781,694 - GFF735 0.63 -0.7
781,694 - GFF735 0.63 -0.1
781,706 - GFF735 0.64 -1.0
781,764 + GFF735 0.68 -0.4
781,765 - GFF735 0.68 +0.3
781,768 + GFF735 0.68 +0.3
781,768 + GFF735 0.68 -0.9
781,769 - GFF735 0.68 -0.6
781,769 - GFF735 0.68 +1.3
781,780 + GFF735 0.69 +0.1
781,781 - GFF735 0.69 -2.7
782,036 - GFF735 0.86 +0.9
782,039 + GFF735 0.86 +0.7
782,040 - GFF735 0.86 +0.2
782,040 - GFF735 0.86 -0.3
782,040 - GFF735 0.86 -0.5
782,040 - GFF735 0.86 -1.7
782,040 - GFF735 0.86 +0.7
782,040 - GFF735 0.86 +0.1
782,040 - GFF735 0.86 +0.4
782,040 - GFF735 0.86 -0.1
782,040 - GFF735 0.86 -0.1
782,334 + -0.8
782,334 + +1.0
782,394 - GFF736 0.16 +0.6
782,394 - GFF736 0.16 +0.9
782,490 + GFF736 0.27 -0.4
782,493 + GFF736 0.27 -0.4
782,493 + GFF736 0.27 +0.6
782,494 - GFF736 0.27 -1.0
782,494 - GFF736 0.27 +0.9
782,494 - GFF736 0.27 -2.7
782,502 + GFF736 0.28 -1.0
782,503 - GFF736 0.28 +0.7
782,503 - GFF736 0.28 +1.0
782,503 - GFF736 0.28 +0.5
782,653 - GFF736 0.45 -1.0
782,706 + GFF736 0.50 -0.3
782,707 - GFF736 0.51 +0.4
782,724 + GFF736 0.52 -1.8
782,724 + GFF736 0.52 +1.1
782,724 + GFF736 0.52 -0.1
782,965 + GFF736 0.79 +0.1
782,965 + GFF736 0.79 -0.6
782,965 + GFF736 0.79 -0.1
782,966 - GFF736 0.79 -0.7
783,108 + -0.6
783,109 - +0.1
783,317 + +1.1
783,350 + -0.7
783,674 + GFF737 0.19 +1.5
783,674 + GFF737 0.19 -0.7
783,675 - GFF737 0.19 -0.5
783,980 + GFF737 0.46 +0.4
783,981 - GFF737 0.46 -1.5

Or see this region's nucleotide sequence