Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF725 and GFF726 are separated by 95 nucleotides GFF726 and GFF727 are separated by 124 nucleotides GFF727 and GFF728 are separated by 1 nucleotides GFF728 and GFF729 overlap by 19 nucleotides GFF729 and GFF730 are separated by 67 nucleotides
GFF725 - Dihydrolipoyl dehydrogenase, at 772,226 to 773,641
GFF725
GFF726 - hypothetical protein, at 773,737 to 774,015
GFF726
GFF727 - Lipoyl synthase, at 774,140 to 775,093
GFF727
GFF728 - Ribosome association toxin RatA, at 775,095 to 775,553
GFF728
GFF729 - hypothetical protein, at 775,535 to 775,948
GFF729
GFF730 - Leu/Ile/Val-binding protein, at 776,016 to 777,116
GFF730
Position (kb) 774
775
776 Strain fitness (log2 ratio) -2
-1
0
1 at 773.263 kb on + strand, within GFF725 at 773.264 kb on - strand, within GFF725 at 773.294 kb on + strand, within GFF725 at 773.294 kb on + strand, within GFF725 at 773.294 kb on + strand, within GFF725 at 773.295 kb on - strand, within GFF725 at 773.295 kb on - strand, within GFF725 at 773.295 kb on - strand, within GFF725 at 773.295 kb on - strand, within GFF725 at 773.752 kb on + strand at 773.752 kb on + strand at 773.753 kb on - strand at 773.753 kb on - strand at 773.753 kb on - strand at 774.083 kb on + strand at 774.083 kb on + strand at 774.083 kb on + strand at 774.083 kb on + strand at 775.536 kb on + strand at 775.537 kb on - strand at 775.729 kb on - strand, within GFF729 at 776.017 kb on + strand at 776.018 kb on - strand at 776.050 kb on + strand at 776.051 kb on - strand at 776.051 kb on - strand at 776.051 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 773,263 + GFF725 0.73 +0.1 773,264 - GFF725 0.73 -2.0 773,294 + GFF725 0.75 +0.3 773,294 + GFF725 0.75 +0.1 773,294 + GFF725 0.75 -0.7 773,295 - GFF725 0.75 -0.7 773,295 - GFF725 0.75 -0.9 773,295 - GFF725 0.75 +0.7 773,295 - GFF725 0.75 -0.3 773,752 + +0.3 773,752 + +0.2 773,753 - +0.6 773,753 - +0.8 773,753 - -0.7 774,083 + -0.3 774,083 + -1.2 774,083 + +0.4 774,083 + -0.5 775,536 + -1.8 775,537 - +0.1 775,729 - GFF729 0.47 -0.7 776,017 + +0.8 776,018 - +0.0 776,050 + -0.8 776,051 - +0.2 776,051 - -1.4 776,051 - +0.9
Or see this region's nucleotide sequence