Strain Fitness in Xanthobacter sp. DMC5 around GFF726

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF725 and GFF726 are separated by 95 nucleotidesGFF726 and GFF727 are separated by 124 nucleotides GFF725 - Dihydrolipoyl dehydrogenase, at 772,226 to 773,641 GFF725 GFF726 - hypothetical protein, at 773,737 to 774,015 GFF726 GFF727 - Lipoyl synthase, at 774,140 to 775,093 GFF727 Position (kb) 773 774 775Strain fitness (log2 ratio) -2 -1 0 1at 772.817 kb on + strand, within GFF725at 773.263 kb on + strand, within GFF725at 773.264 kb on - strand, within GFF725at 773.294 kb on + strand, within GFF725at 773.294 kb on + strand, within GFF725at 773.294 kb on + strand, within GFF725at 773.295 kb on - strand, within GFF725at 773.295 kb on - strand, within GFF725at 773.295 kb on - strand, within GFF725at 773.295 kb on - strand, within GFF725at 773.752 kb on + strandat 773.752 kb on + strandat 773.753 kb on - strandat 773.753 kb on - strandat 773.753 kb on - strandat 774.083 kb on + strandat 774.083 kb on + strandat 774.083 kb on + strandat 774.083 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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772,817 + GFF725 0.42 -0.1
773,263 + GFF725 0.73 +0.1
773,264 - GFF725 0.73 -2.0
773,294 + GFF725 0.75 +0.3
773,294 + GFF725 0.75 +0.1
773,294 + GFF725 0.75 -0.7
773,295 - GFF725 0.75 -0.7
773,295 - GFF725 0.75 -0.9
773,295 - GFF725 0.75 +0.7
773,295 - GFF725 0.75 -0.3
773,752 + +0.3
773,752 + +0.2
773,753 - +0.6
773,753 - +0.8
773,753 - -0.7
774,083 + -0.3
774,083 + -1.2
774,083 + +0.4
774,083 + -0.5

Or see this region's nucleotide sequence