Strain Fitness in Xanthobacter sp. DMC5 around GFF72

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF70 and GFF71 are separated by 12 nucleotidesGFF71 and GFF72 are separated by 3 nucleotidesGFF72 and GFF73 are separated by 298 nucleotidesGFF73 and GFF74 are separated by 124 nucleotides GFF70 - hypothetical protein, at 80,712 to 81,656 GFF70 GFF71 - Biopolymer transport protein ExbD, at 81,669 to 82,127 GFF71 GFF72 - Tol-Pal system protein TolQ, at 82,131 to 82,937 GFF72 GFF73 - hypothetical protein, at 83,236 to 83,745 GFF73 GFF74 - hypothetical protein, at 83,870 to 84,277 GFF74 Position (kb) 82 83Strain fitness (log2 ratio) -2 -1 0 1 2at 82.997 kb on - strandat 83.180 kb on + strandat 83.180 kb on + strandat 83.181 kb on - strandat 83.606 kb on + strand, within GFF73at 83.606 kb on + strand, within GFF73at 83.606 kb on + strand, within GFF73at 83.607 kb on - strand, within GFF73at 83.607 kb on - strand, within GFF73at 83.713 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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82,997 - +0.1
83,180 + +1.0
83,180 + +0.2
83,181 - -1.7
83,606 + GFF73 0.73 -1.4
83,606 + GFF73 0.73 +0.2
83,606 + GFF73 0.73 +0.4
83,607 - GFF73 0.73 -1.5
83,607 - GFF73 0.73 -1.9
83,713 - +1.8

Or see this region's nucleotide sequence