Strain Fitness in Xanthobacter sp. DMC5 around GFF716

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF715 and GFF716 are separated by 525 nucleotidesGFF716 and GFF717 are separated by 124 nucleotidesGFF717 and GFF718 are separated by 161 nucleotides GFF715 - DNA topoisomerase 4 subunit A, at 762,128 to 764,365 GFF715 GFF716 - DNA repair protein RecO, at 764,891 to 765,625 GFF716 GFF717 - hypothetical protein, at 765,750 to 766,064 GFF717 GFF718 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 766,226 to 767,236 GFF718 Position (kb) 764 765 766Strain fitness (log2 ratio) -2 -1 0 1at 764.501 kb on + strandat 764.502 kb on - strandat 764.521 kb on + strandat 764.560 kb on - strandat 765.142 kb on - strand, within GFF716at 765.420 kb on + strand, within GFF716at 766.072 kb on + strandat 766.507 kb on + strand, within GFF718

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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764,501 + -0.8
764,502 - -0.1
764,521 + +0.3
764,560 - +0.3
765,142 - GFF716 0.34 -0.4
765,420 + GFF716 0.72 +0.5
766,072 + -2.2
766,507 + GFF718 0.28 +0.3

Or see this region's nucleotide sequence