Strain Fitness in Xanthobacter sp. DMC5 around GFF702

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF701 and GFF702 are separated by 144 nucleotidesGFF702 and GFF703 are separated by 124 nucleotides GFF701 - Heme A synthase, at 749,518 to 750,594 GFF701 GFF702 - hypothetical protein, at 750,739 to 750,951 GFF702 GFF703 - hypothetical protein, at 751,076 to 752,545 GFF703 Position (kb) 750 751Strain fitness (log2 ratio) -2 -1 0 1at 749.771 kb on + strand, within GFF701at 749.900 kb on + strand, within GFF701at 749.901 kb on - strand, within GFF701at 750.096 kb on - strand, within GFF701at 750.096 kb on - strand, within GFF701at 750.302 kb on + strand, within GFF701at 750.303 kb on - strand, within GFF701at 750.518 kb on + strandat 750.518 kb on + strandat 750.519 kb on - strandat 750.654 kb on - strandat 750.871 kb on + strand, within GFF702at 750.871 kb on + strand, within GFF702at 750.872 kb on - strand, within GFF702at 750.872 kb on - strand, within GFF702at 751.368 kb on + strand, within GFF703at 751.369 kb on - strand, within GFF703at 751.374 kb on + strand, within GFF703at 751.374 kb on + strand, within GFF703at 751.374 kb on + strand, within GFF703at 751.375 kb on - strand, within GFF703at 751.375 kb on - strand, within GFF703at 751.643 kb on + strand, within GFF703at 751.643 kb on + strand, within GFF703

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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749,771 + GFF701 0.23 +0.7
749,900 + GFF701 0.35 -0.0
749,901 - GFF701 0.36 +0.2
750,096 - GFF701 0.54 -1.0
750,096 - GFF701 0.54 +0.9
750,302 + GFF701 0.73 -0.3
750,303 - GFF701 0.73 -0.4
750,518 + +0.3
750,518 + +1.0
750,519 - -1.2
750,654 - -0.3
750,871 + GFF702 0.62 -1.0
750,871 + GFF702 0.62 -0.2
750,872 - GFF702 0.62 -0.7
750,872 - GFF702 0.62 -0.3
751,368 + GFF703 0.20 -0.4
751,369 - GFF703 0.20 +0.0
751,374 + GFF703 0.20 +0.3
751,374 + GFF703 0.20 +0.0
751,374 + GFF703 0.20 +0.3
751,375 - GFF703 0.20 +1.1
751,375 - GFF703 0.20 -0.5
751,643 + GFF703 0.39 -2.7
751,643 + GFF703 0.39 -0.5

Or see this region's nucleotide sequence